Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 6.1e-274 946.8 461 100.0
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 9.9e-240 833.2 460 88.5
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.4e-230 802.7 468 85.7
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 6.7e-212 740.7 452 79.4
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.7e-168 595.9 460 61.3
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.7e-167 593.2 457 61.3
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.1e-157 559.7 460 58.9
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 3.2e-153 545.8 542 51.5
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 5.4e-153 545.0 461 54.7
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.5e-152 542.3 463 55.7
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.0e-151 540.8 461 56.6
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 6.2e-149 531.6 463 55.9
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.5e-147 526.9 460 55.2
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.4e-147 525.8 462 54.1
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 2.9e-146 522.7 460 54.8
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.9e-145 520.0 467 52.2
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.7e-143 513.5 463 53.6
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 3.0e-143 512.7 461 51.8
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.0e-140 502.3 459 50.5
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 5.2e-140 501.9 463 52.1
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.5e-139 500.4 423 55.8
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 4.4e-139 498.8 460 51.7
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.7e-138 495.7 463 49.2
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.3e-135 487.3 458 51.3
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 3.1e-132 476.1 464 48.9
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 5.8e-131 471.9 461 50.3
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 5.8e-131 471.9 460 48.0
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.7e-130 470.3 458 47.8
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 8.4e-130 468.0 406 53.9
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 9.2e-129 464.5 460 48.5
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 2.1e-128 463.4 475 48.4
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 2.7e-128 463.0 459 49.2
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 2.7e-128 463.0 464 47.4
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.5e-128 462.6 439 50.3
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 7.8e-128 461.5 458 47.4
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.7e-127 460.3 458 47.6
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 8.6e-127 458.0 460 48.5
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 8.6e-127 458.0 460 48.5
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 9.6e-126 454.5 459 47.5
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.1e-124 451.1 457 48.1
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 6.9e-124 448.4 462 47.2
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 7.6e-123 444.9 457 48.4
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.7e-122 443.7 512 43.9
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 5.1e-119 432.2 456 44.5
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.1e-113 414.5 467 45.2
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.9e-113 413.7 487 45.0
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.4e-113 413.3 466 44.6
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.2e-113 412.5 435 48.3
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 9.3e-113 411.4 435 48.3
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 9.3e-113 411.4 435 48.0
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 1.2e-112 411.0 466 44.8
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.6e-112 410.6 466 44.8
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 2.7e-112 409.8 460 45.7
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 3.5e-112 409.5 447 46.3
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.0e-112 408.7 466 44.2
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.3e-111 406.8 466 44.8
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 5.6e-110 402.1 465 44.1
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 9.6e-110 401.4 467 46.5
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 9.6e-110 401.4 467 44.1
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.3e-109 401.0 465 45.2
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 5.3e-108 395.6 475 46.1
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 6.9e-108 395.2 465 43.2
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.5e-107 394.0 477 43.6
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.6e-107 391.7 467 43.7
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.3e-106 391.0 531 41.8
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 4.9e-106 389.0 378 50.0
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.4e-106 388.7 501 41.5
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.2e-105 386.3 460 45.4
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.5e-104 382.9 460 45.2
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.8e-103 380.6 492 41.5
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.8e-101 373.2 419 45.1
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.0e-99 367.1 475 41.3
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 3.4e-99 366.3 450 43.6
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.3e-98 364.4 452 41.6
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.7e-98 364.0 452 41.2
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 3.8e-98 362.8 464 40.9
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 1.4e-97 360.9 438 45.7
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.4e-97 360.9 382 50.8
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 4.2e-97 359.4 381 48.8
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 2.1e-96 357.1 453 40.8
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.0e-95 354.8 456 41.4
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 7.4e-94 348.6 462 38.7
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 2.8e-93 346.7 467 40.7
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 3.1e-92 343.2 461 38.4
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 5.3e-92 342.4 465 40.2
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 6.9e-92 342.0 453 39.5
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 6.9e-92 342.0 375 45.3
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 6.9e-92 342.0 481 38.3
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.5e-91 340.9 451 39.7
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.5e-91 340.9 467 40.3
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.5e-91 340.9 467 40.3
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 7.6e-91 338.6 451 39.9
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.7e-90 337.4 455 39.6
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.2e-90 337.0 416 42.1
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 6.5e-90 335.5 470 39.8
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 1.1e-89 334.7 453 39.3
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.5e-89 333.6 461 39.9
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 7.2e-89 332.0 474 38.4
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 7.2e-89 332.0 451 39.0
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 6.1e-88 328.9 452 39.4
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.1e-88 328.9 463 39.7
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.8e-87 327.4 471 37.4
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.9e-87 326.2 476 37.2
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 3.9e-87 326.2 455 40.9
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.1e-87 325.9 473 39.1
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.1e-86 324.7 452 38.9
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.7e-85 319.7 457 38.7
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 3.7e-85 319.7 455 40.0
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.8e-84 317.4 481 36.4
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.8e-84 317.4 463 40.4
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 3.1e-84 316.6 384 42.4
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 3.3e-78 296.6 453 36.0
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 2.2e-77 293.9 484 34.1
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 2.4e-76 290.4 465 34.8
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 2.4e-76 290.4 453 37.5
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 2.4e-76 290.4 465 34.8
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 3.4e-75 286.6 467 34.7
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.9e-74 283.5 455 35.2
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 8.5e-74 282.0 305 46.9
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.4e-73 281.2 461 35.4
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.9e-73 280.8 455 34.7
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 9.4e-73 278.5 432 36.8
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 9.4e-73 278.5 264 51.1
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 9.4e-73 278.5 468 35.3
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 9.4e-73 278.5 458 34.5
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 3.6e-72 276.6 491 34.0
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 7.9e-72 275.4 257 54.1
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 2.2e-69 267.3 490 34.1
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 5.9e-67 259.2 483 33.5
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 5.9e-67 259.2 242 53.7
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 1.7e-66 257.7 422 35.8
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.9e-65 254.2 382 37.4
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.2e-63 246.1 319 41.4
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 9.7e-62 241.9 334 39.8
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.1e-60 236.9 302 41.7
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 5.9e-59 232.6 472 34.7
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.5e-57 227.3 310 41.0
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 4.2e-57 226.5 502 30.9
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 2.7e-56 223.8 302 40.1
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 2.7e-56 223.8 311 38.3
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 6.5e-50 202.6 431 30.9
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 2.6e-46 190.7 359 30.4
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 6.3e-45 186.0 145 59.3
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.6e-43 181.4 292 39.0
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 5.0e-42 176.4 250 37.6
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 7.3e-41 172.6 134 59.7
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.5e-38 164.9 174 49.4
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.7e-37 161.4 198 45.5
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.4e-37 159.5 143 54.5
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 8.3e-37 159.1 291 36.1
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.1e-28 132.1 423 24.3
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 3.9e-26 123.6 314 27.4
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 8.6e-26 122.5 201 32.3
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 1.2e-24 118.6 84 59.5
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.9e-21 106.7 121 45.5
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 4.6e-19 100.1 72 66.7
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 3.9e-18 97.1 147 37.4
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 6.4e-13 79.7 61 57.4
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 1.9e-12 78.2 59 61.0
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.4e-12 76.6 131 38.2
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.2e-11 75.5 87 40.2
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.5e-11 73.9 87 31.0
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 7.8e-11 72.8 65 47.7
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 6.6e-10 69.7 158 29.1
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 2.8e-08 64.3 97 40.2
Dinv32093 Davidia involucrata HOM05D004162 ORTHO05D004543 4.0e-07 60.5 49 61.2
Cpa.g.sc10.94 Carica papaya HOM05D004162 ORTHO05D004543 5.2e-07 60.1 37 64.9


User provided reference genes

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