Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.4e-262 908.3 462 100.0
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.9e-143 512.3 433 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 2.1e-141 506.5 455 59.1
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 3.6e-141 505.8 481 55.9
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 2.0e-139 500.0 436 58.5
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.0e-139 500.0 450 57.8
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 2.6e-139 499.6 463 56.6
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 3.4e-139 499.2 451 58.8
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 4.4e-139 498.8 432 59.5
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.8e-139 498.4 468 56.6
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 9.9e-139 497.7 465 55.3
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.3e-138 497.3 448 57.8
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.3e-138 497.3 440 58.0
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.7e-138 496.9 454 58.1
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.7e-138 496.9 428 59.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.2e-138 496.5 461 56.8
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.9e-138 496.1 446 57.4
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 2.9e-138 496.1 431 58.7
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.9e-138 496.1 443 57.1
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 3.8e-138 495.7 429 59.4
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 4.9e-138 495.4 432 58.1
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 4.9e-138 495.4 429 58.0
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 6.4e-138 495.0 429 58.7
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 8.4e-138 494.6 429 59.4
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 8.4e-138 494.6 428 59.3
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.4e-137 493.8 447 57.3
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 1.4e-137 493.8 462 56.9
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.4e-137 493.8 451 56.3
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.9e-137 493.4 429 59.0
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.9e-137 493.4 450 54.9
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 2.4e-137 493.0 429 59.0
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 2.4e-137 493.0 442 58.4
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.4e-137 493.0 446 58.3
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.4e-137 493.0 454 57.0
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.2e-137 492.7 429 57.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.2e-137 492.7 429 59.4
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 4.1e-137 492.3 457 56.0
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.1e-137 492.3 454 57.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 4.1e-137 492.3 449 56.8
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 5.4e-137 491.9 462 55.8
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 5.4e-137 491.9 444 57.7
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 5.4e-137 491.9 449 57.7
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.4e-137 491.9 428 59.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 7.1e-137 491.5 427 60.0
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.1e-137 491.5 429 59.2
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 7.1e-137 491.5 455 55.2
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 9.2e-137 491.1 451 58.1
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.2e-137 491.1 449 56.8
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 9.2e-137 491.1 429 58.0
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 9.2e-137 491.1 429 57.3
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 9.2e-137 491.1 462 55.8
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.2e-136 490.7 451 56.8
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.2e-136 490.7 426 58.5
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.6e-136 490.3 452 56.6
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.6e-136 490.3 464 57.1
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.6e-136 490.3 460 55.0
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.6e-136 490.3 445 57.1
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 2.1e-136 490.0 473 55.2
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.7e-136 489.6 435 58.2
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 2.7e-136 489.6 456 56.4
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 3.5e-136 489.2 429 57.3
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.5e-136 489.2 426 58.2
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 6.0e-136 488.4 442 55.7
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 7.8e-136 488.0 446 57.4
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 7.8e-136 488.0 434 59.0
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 7.8e-136 488.0 445 56.9
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.3e-135 487.3 433 58.4
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.7e-135 486.9 454 57.0
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.7e-135 486.9 426 58.0
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 2.3e-135 486.5 435 56.8
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.0e-135 486.1 442 55.2
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 3.0e-135 486.1 435 56.6
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.0e-135 486.1 472 55.3
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 6.6e-135 485.0 440 57.3
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.6e-135 485.0 434 57.1
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 8.6e-135 484.6 433 56.6
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 8.6e-135 484.6 420 59.3
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 8.6e-135 484.6 464 56.0
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.5e-134 483.8 419 59.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.9e-134 483.4 441 56.9
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.9e-134 483.4 436 57.6
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 3.3e-134 482.6 420 58.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 3.3e-134 482.6 420 58.8
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.3e-134 482.3 441 56.7
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 7.3e-134 481.5 418 59.8
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 9.6e-134 481.1 447 55.9
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 9.6e-134 481.1 420 59.0
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 9.6e-134 481.1 420 58.8
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 2.1e-133 479.9 477 54.1
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 2.1e-133 479.9 477 54.1
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.1e-133 479.9 426 58.2
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.1e-133 479.9 487 53.4
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 8.1e-133 478.0 420 59.0
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 8.1e-133 478.0 434 56.9
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.1e-132 477.6 434 56.2
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.4e-132 477.2 462 54.8
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.8e-132 476.9 477 54.1
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.8e-132 476.9 442 56.3
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.4e-132 476.5 418 58.4
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.4e-132 476.5 448 55.4
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 4.0e-132 475.7 420 58.3
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 6.9e-132 474.9 446 56.1
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.2e-131 474.2 420 57.6
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.5e-131 473.8 421 57.7
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.5e-131 473.8 418 58.1
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.5e-131 473.8 437 56.3
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.5e-131 473.8 429 56.6
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.0e-131 473.4 418 58.9
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 3.4e-131 472.6 418 57.4
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 3.4e-131 472.6 448 55.1
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 3.4e-131 472.6 418 57.7
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 7.6e-131 471.5 420 57.1
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 2.4e-129 466.5 463 53.8
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 2.1e-128 463.4 482 51.9
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 6.6e-127 458.4 423 57.4
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 5.6e-126 455.3 451 54.1
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 2.1e-125 453.4 478 52.1
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 6.4e-122 441.8 407 57.2
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.9e-121 440.3 431 56.1
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.4e-121 438.7 406 57.1
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.4e-118 428.3 446 51.8
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 5.3e-116 422.2 361 60.1
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.3e-103 380.2 422 46.0
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 8.7e-103 378.3 327 59.3
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 3.7e-101 372.9 336 58.9
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 6.3e-101 372.1 297 61.6
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.8e-100 370.5 296 62.5
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 2.6e-99 366.7 422 52.1
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 5.0e-98 362.5 300 60.7
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.6e-96 357.5 183 99.5
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.7e-96 356.7 430 45.3
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.1e-92 342.8 303 58.7
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.7e-90 337.4 322 54.7
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.9e-84 315.5 303 55.1
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.9e-84 315.5 257 61.5
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 3.6e-80 303.1 270 56.7
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.6e-75 287.0 356 43.8
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 2.2e-66 257.3 240 56.2
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.7e-42 177.9 159 59.1
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.5e-41 174.9 169 55.0
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.7e-27 127.5 126 54.0
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.0e-26 125.6 135 50.4
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.5e-25 121.7 127 48.8
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.4e-23 115.2 118 51.7
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.8e-23 114.8 90 60.0
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.0e-19 99.8 131 39.7
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 3.9e-18 97.1 256 30.1
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 3.6e-16 90.5 98 51.0
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 3.6e-16 90.5 98 51.0
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 9.0e-15 85.9 78 52.6
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 4.4e-14 83.6 86 48.8
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 7.6e-14 82.8 78 51.3
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 9.9e-14 82.4 78 51.3
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-13 82.0 78 51.3
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 4.9e-13 80.1 76 50.0
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 8.4e-13 79.3 79 50.6
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.8e-07 61.6 78 39.7
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.8e-07 61.6 78 39.7
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 3.1e-07 60.8 79 48.1
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.1e-07 60.8 92 42.4
Cre09.g404903 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.3e-07 60.1 30 96.7
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 6.9e-07 59.7 78 39.7


User provided reference genes

Program Settings