Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.4e-261 906.0 533 100.0
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 8.3e-73 278.9 522 40.2
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 6.4e-65 252.7 509 38.1
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 4.1e-64 250.0 514 38.9
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.1e-63 247.7 510 38.8
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 6.0e-63 246.1 509 38.3
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 6.0e-63 246.1 509 38.3
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.3e-62 244.2 513 38.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.3e-62 244.2 515 36.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.9e-62 243.4 507 38.1
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.9e-62 243.4 509 37.9
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 4.3e-61 240.0 513 37.4
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 7.3e-61 239.2 510 37.8
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 7.3e-61 239.2 528 36.9
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.6e-60 238.0 539 36.7
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.1e-60 237.7 514 36.8
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 4.7e-60 236.5 509 37.7
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 6.2e-60 236.1 499 37.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.1e-59 235.3 514 36.6
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 4.0e-59 233.4 506 36.8
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.0e-59 233.4 508 35.8
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 6.8e-59 232.6 509 37.5
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 8.9e-59 232.3 522 36.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.2e-58 231.9 512 36.9
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.6e-58 230.7 514 37.7
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.4e-58 230.3 511 36.4
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 4.4e-58 229.9 512 36.9
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 5.8e-58 229.6 485 38.1
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.6e-58 229.2 302 46.4
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.3e-57 228.4 519 36.4
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.3e-57 228.4 521 35.9
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.3e-57 228.4 519 36.0
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.7e-57 228.0 510 36.3
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 2.2e-57 227.6 510 35.7
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 6.4e-57 226.1 499 36.5
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 8.4e-57 225.7 505 36.2
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 8.4e-57 225.7 499 36.3
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 8.4e-57 225.7 499 36.5
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.4e-56 224.9 513 37.2
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.1e-56 223.4 178 66.3
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.4e-56 223.0 499 36.5
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 7.1e-56 222.6 515 35.7
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-55 221.9 499 36.5
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.2e-55 221.9 517 35.8
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.6e-55 221.5 499 36.5
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.1e-55 221.1 514 37.5
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.1e-55 221.1 514 37.5
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 2.7e-55 220.7 466 39.5
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.6e-55 219.9 514 37.4
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 6.0e-55 219.5 511 35.8
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.0e-54 218.8 495 36.2
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.0e-54 218.8 501 37.1
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 2.3e-54 217.6 514 35.6
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.3e-54 217.6 507 37.1
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.9e-54 216.9 520 34.8
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.9e-54 216.9 508 36.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.1e-54 216.5 510 35.5
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 6.6e-54 216.1 513 36.1
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 6.6e-54 216.1 539 34.9
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 8.6e-54 215.7 499 35.7
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 8.6e-54 215.7 321 42.4
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 1.1e-53 215.3 504 35.3
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.9e-53 214.5 460 38.7
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.9e-53 214.5 460 38.7
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.9e-53 214.5 509 37.1
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.3e-53 213.8 499 36.1
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 4.3e-53 213.4 510 35.5
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 5.6e-53 213.0 470 38.3
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 5.6e-53 213.0 509 36.1
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.3e-53 212.6 496 36.5
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 9.6e-53 212.2 511 35.8
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.6e-52 211.5 508 34.8
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.1e-52 211.1 513 36.6
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.8e-52 210.7 514 34.2
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 6.2e-52 209.5 521 34.4
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 6.2e-52 209.5 301 45.2
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.1e-52 209.1 424 38.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.4e-51 208.4 501 33.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 5.2e-51 206.5 301 44.5
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 6.8e-51 206.1 537 34.3
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-50 205.3 495 36.2
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.2e-50 205.3 178 62.9
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 3.4e-50 203.8 510 33.5
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 7.6e-50 202.6 511 34.4
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 9.9e-50 202.2 515 34.6
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 2.9e-49 200.7 156 66.7
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.8e-49 200.3 499 35.1
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.8e-49 200.3 178 61.8
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.8e-49 200.3 156 66.7
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 4.9e-49 199.9 513 34.1
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.1e-48 198.7 508 34.6
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.1e-48 198.7 159 66.0
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.9e-48 198.0 520 34.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.4e-48 197.6 158 65.8
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 9.3e-48 195.7 513 34.1
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 9.3e-48 195.7 515 34.0
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.2e-47 195.3 508 34.1
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 1.6e-47 194.9 514 33.3
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.1e-47 194.5 533 33.2
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.7e-47 194.1 284 44.0
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 2.7e-47 194.1 156 64.1
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 3.5e-47 193.7 516 34.7
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 3.5e-47 193.7 516 33.9
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.3e-46 191.0 519 33.5
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.0e-46 190.7 520 33.5
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.1e-46 189.9 514 35.0
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 6.6e-46 189.5 203 54.7
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.1e-45 188.7 156 63.5
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.1e-43 182.2 462 35.1
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.8e-43 181.4 178 55.1
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 6.9e-43 179.5 516 33.7
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 9.0e-43 179.1 141 66.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.4e-42 177.2 290 40.7
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.3e-41 175.3 481 33.9
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.7e-41 174.9 135 67.4
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.7e-41 174.9 147 61.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 8.4e-41 172.6 151 61.6
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 7.1e-40 169.5 456 34.2
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 8.7e-38 162.5 498 33.7
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.6e-36 158.3 470 33.2
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 9.0e-35 152.5 133 61.7
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 2.6e-34 151.0 502 30.7
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 4.5e-34 150.2 154 53.2
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.5e-34 150.2 178 48.3
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 9.9e-34 149.1 97 75.3
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.4e-32 145.2 124 60.5
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.4e-32 145.2 514 30.2
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 7.1e-32 142.9 463 31.5
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 7.1e-32 142.9 463 31.5
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 2.3e-30 137.9 447 32.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.9e-29 134.8 496 30.8
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 7.4e-29 132.9 225 39.6
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 9.6e-29 132.5 437 31.8
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.4e-27 127.9 237 36.7
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.2e-26 125.6 131 54.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.9e-25 120.2 538 27.5
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.6e-23 115.2 434 30.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 6.7e-22 109.8 177 39.0
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.2e-18 99.0 108 50.0
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 2.0e-18 98.2 67 71.6
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.0e-17 95.9 149 43.0
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.0e-17 93.6 58 79.3
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 1.9e-16 91.7 55 81.8
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.2e-15 89.0 233 34.3
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 2.1e-15 88.2 198 33.3
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 3.9e-14 84.0 394 27.7
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.6e-12 78.6 194 34.5
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.8e-12 77.8 409 26.7
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.2e-08 64.3 282 30.9
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 7.9e-07 59.7 281 29.5


User provided reference genes

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