Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g691776 Chlamydomonas reinhardtii HOM05D002276 ORTHO05D034389 2.8e-126 455.3 231 100.0
MCO11G856 Micromonas commoda HOM05D052124 ORTHO05D034389 1.9e-18 97.1 178 36.5
PRCOL_00006950 Prasinoderma coloniale HOM05D052124 ORTHO05D034389 8.7e-11 71.6 131 35.9
CSS0013434 Camellia sinensis var. sinensis HOM05D002276 ORTHO05D002381 1.9e-10 70.5 156 30.1
THA.LOC104823349 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 1.3e-09 67.8 149 28.9
Cre09.g386350 Chlamydomonas reinhardtii HOM05D002276 ORTHO05D002381 1.6e-09 67.4 179 31.8
Actinidia20794 Actinidia chinensis HOM05D002276 ORTHO05D002381 2.2e-09 67.0 156 30.8
Ciclev10011982m.g Citrus clementina HOM05D002276 ORTHO05D002381 2.2e-09 67.0 156 30.1
Lj1g0009031 Lotus japonicus HOM05D002276 ORTHO05D002381 2.8e-09 66.6 156 31.4
Prupe.2G265300 Prunus persica HOM05D002276 ORTHO05D002381 4.8e-09 65.9 155 31.0
Sabra04G0154300 Salix brachista HOM05D002276 ORTHO05D002381 4.8e-09 65.9 155 29.7
MD01G1169100 Malus domestica HOM05D002276 ORTHO05D002381 8.2e-09 65.1 155 30.3
Potri.016G138100 Populus trichocarpa HOM05D002276 ORTHO05D002381 8.2e-09 65.1 155 29.7
Cpa.g.sc86.75 Carica papaya HOM05D002276 ORTHO05D002381 1.1e-08 64.7 154 27.9
TWI77G0614 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 1.4e-08 64.3 156 29.5
TWI53G2065 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 1.8e-08 63.9 155 29.0
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 2.4e-08 63.5 155 30.3
vmacro08945 Vaccinium macrocarpon HOM05D002276 ORTHO05D002381 2.4e-08 63.5 156 30.8
vmacro20377 Vaccinium macrocarpon HOM05D002276 ORTHO05D002381 3.1e-08 63.2 156 28.8
DCAR_020154 Daucus carota HOM05D002276 ORTHO05D002381 4.1e-08 62.8 155 27.7
MD07G1235000 Malus domestica HOM05D002276 ORTHO05D002381 4.1e-08 62.8 165 30.3
Rhsim05G0231600 Rhododendron simsii HOM05D002276 ORTHO05D002381 4.1e-08 62.8 156 30.1
CDE04G0622 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 5.3e-08 62.4 155 29.0
Dinv16968 Davidia involucrata HOM05D002276 ORTHO05D002381 5.3e-08 62.4 156 29.5
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 5.3e-08 62.4 155 29.7
THA.LOC104806195 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 5.3e-08 62.4 149 28.2
Duzib151G1136 Durio zibethinus HOM05D002276 ORTHO05D002381 6.9e-08 62.0 155 28.4
Gorai.006G235600 Gossypium raimondii HOM05D002276 ORTHO05D002381 6.9e-08 62.0 155 28.4
Thecc.04G150200 Theobroma cacao HOM05D002276 ORTHO05D002381 6.9e-08 62.0 155 29.0
Actinidia31634 Actinidia chinensis HOM05D002276 ORTHO05D002381 9.0e-08 61.6 155 29.7
CARHR133240 Cardamine hirsuta HOM05D002276 ORTHO05D002381 9.0e-08 61.6 164 27.4
Thhalv10016682m.g Eutrema salsugineum HOM05D002276 ORTHO05D002381 9.0e-08 61.6 163 28.8
Gohir.A09G213664 Gossypium hirsutum HOM05D002276 ORTHO05D002381 9.0e-08 61.6 155 28.4
TPR.G13982 Trifolium pratense HOM05D002276 ORTHO05D002381 9.0e-08 61.6 155 31.6
HanXRQChr07g0205051 Helianthus annuus HOM05D002276 ORTHO05D002381 1.2e-07 61.2 155 27.7
HanXRQChr08g0216851 Helianthus annuus HOM05D002276 ORTHO05D002381 1.2e-07 61.2 155 27.7
Manes.08G170400 Manihot esculenta HOM05D002276 ORTHO05D002381 1.2e-07 61.2 155 29.7
Nn2g10273 Nelumbo nucifera HOM05D002276 ORTHO05D002381 1.2e-07 61.2 155 28.4
QL02p018496 Quercus lobata HOM05D002276 ORTHO05D002381 1.2e-07 61.2 150 28.7
QL10p023546 Quercus lobata HOM05D002276 ORTHO05D002381 1.2e-07 61.2 158 29.1
Sc14g0005650 Simmondsia chinensis HOM05D002276 ORTHO05D002381 1.2e-07 61.2 156 25.6
Glyma.04G223500 Glycine max HOM05D002276 ORTHO05D002381 1.5e-07 60.8 163 28.8
VMungo1309G1834 Vigna mungo HOM05D002276 ORTHO05D002381 1.5e-07 60.8 149 31.5
Medtr3g093800 Medicago truncatula HOM05D002276 ORTHO05D002381 2.0e-07 60.5 156 30.8
QL10p000746 Quercus lobata HOM05D002276 ORTHO05D002381 2.0e-07 60.5 158 28.5
QL10p023517 Quercus lobata HOM05D002276 ORTHO05D002381 2.6e-07 60.1 158 29.1
QL10p023539 Quercus lobata HOM05D002276 ORTHO05D002381 2.6e-07 60.1 158 29.1
QL10p023688 Quercus lobata HOM05D002276 ORTHO05D002381 2.6e-07 60.1 158 29.1
QL10p023709 Quercus lobata HOM05D002276 ORTHO05D002381 2.6e-07 60.1 158 29.1
CDE12G0219 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 3.4e-07 59.7 155 29.0
Hma1.2p1_0174F.1_g076750 Hydrangea macrophylla HOM05D002276 ORTHO05D002381 3.4e-07 59.7 163 28.8
unitig_46.g18751 Utricularia gibba HOM05D002276 ORTHO05D002381 3.4e-07 59.7 156 27.6
GSVIVG01030171001 Vitis vinifera HOM05D002276 ORTHO05D002381 3.4e-07 59.7 156 28.2
CDE04G3441 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 4.5e-07 59.3 155 28.4
Haze_09331 Corylus avellana HOM05D002276 ORTHO05D002381 4.5e-07 59.3 165 28.5
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 4.5e-07 59.3 155 28.4
Lj8C53T13 Lonicera japonica HOM05D002276 ORTHO05D002381 5.9e-07 58.9 152 27.6
Lalb_Chr23g0272141 Lupinus albus HOM05D002276 ORTHO05D002381 5.9e-07 58.9 156 30.1
PSO339G3554 Papaver somniferum HOM05D002276 ORTHO05D002381 5.9e-07 58.9 155 27.1
Sabra06G0085000 Salix brachista HOM05D002276 ORTHO05D002381 5.9e-07 58.9 155 27.7
Gohir.D10G112700 Gossypium hirsutum HOM05D002276 ORTHO05D002381 7.7e-07 58.5 155 27.7
HanXRQChr14g0460591 Helianthus annuus HOM05D002276 ORTHO05D002381 7.7e-07 58.5 154 26.6
PSO384G2188 Papaver somniferum HOM05D002276 ORTHO05D002381 7.7e-07 58.5 155 27.1
Potri.006G109300 Populus trichocarpa HOM05D002276 ORTHO05D002381 7.7e-07 58.5 155 27.7
RcHm_v2.0_Chr1g0372471 Rosa chinensis HOM05D002276 ORTHO05D002381 7.7e-07 58.5 156 29.5
BcaC01g05530 Brassica carinata HOM05D002276 ORTHO05D002381 1.0e-06 58.2 163 27.6
A03p21380 Brassica napus HOM05D002276 ORTHO05D002381 1.0e-06 58.2 163 27.6
C03p25250 Brassica napus HOM05D002276 ORTHO05D002381 1.0e-06 58.2 163 27.6
BolC3t14919H Brassica oleracea HOM05D002276 ORTHO05D002381 1.0e-06 58.2 163 27.6
BraA03t11373Z Brassica rapa HOM05D002276 ORTHO05D002381 1.0e-06 58.2 163 27.6
CBR_g48579 Chara braunii HOM05D002276 ORTHO05D002381 1.0e-06 58.2 151 29.1
Gorai.011G124500 Gossypium raimondii HOM05D002276 ORTHO05D002381 1.0e-06 58.2 162 28.4
Lalb_Chr11g0067721 Lupinus albus HOM05D002276 ORTHO05D002381 1.0e-06 58.2 156 30.1
unitig_37.g12475 Utricularia gibba HOM05D002276 ORTHO05D002381 1.0e-06 58.2 155 26.5
ECA238G3222 Erigeron canadensis HOM05D002276 ORTHO05D002381 1.3e-06 57.8 155 28.4
Gohir.D02G003200 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.3e-06 57.8 155 27.1
Gorai.005G003700 Gossypium raimondii HOM05D002276 ORTHO05D002381 1.3e-06 57.8 155 27.1
Sp4g20900 Schrenkiella parvula HOM05D002276 ORTHO05D002381 1.3e-06 57.8 160 27.5
BcaB02g09184 Brassica carinata HOM05D002276 ORTHO05D002381 1.7e-06 57.4 149 26.8
BcaC02g12009 Brassica carinata HOM05D002276 ORTHO05D002381 1.7e-06 57.4 149 26.8
A05p07490 Brassica napus HOM05D002276 ORTHO05D002381 1.7e-06 57.4 149 26.8
C04p08970 Brassica napus HOM05D002276 ORTHO05D002381 1.7e-06 57.4 149 26.8
BolC4t22486H Brassica oleracea HOM05D002276 ORTHO05D002381 1.7e-06 57.4 149 26.8
BraA05t19714Z Brassica rapa HOM05D002276 ORTHO05D002381 1.7e-06 57.4 149 26.8
Gohir.A10G153500 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.7e-06 57.4 155 27.7
Lsat_1_v5_gn_2_126800 Lactuca sativa HOM05D002276 ORTHO05D002381 1.7e-06 57.4 153 27.5
QL10p022116 Quercus lobata HOM05D002276 ORTHO05D002381 1.7e-06 57.4 158 28.5
HPP92_022864 Vanilla planifolia HOM05D002276 ORTHO05D002381 1.7e-06 57.4 156 28.8
Zm00001eb062210 Zea mays HOM05D002276 ORTHO05D002381 1.7e-06 57.4 155 29.0
Zm00001eb440670 Zea mays HOM05D002276 ORTHO05D002381 1.7e-06 57.4 155 29.0
BcaB01g03676 Brassica carinata HOM05D002276 ORTHO05D002381 2.2e-06 57.0 163 27.0
CSS0028562 Camellia sinensis var. sinensis HOM05D002276 ORTHO05D002381 2.2e-06 57.0 154 29.2
Gohir.A02G002850 Gossypium hirsutum HOM05D002276 ORTHO05D002381 2.2e-06 57.0 155 26.5
Mapoly0003s0175 Marchantia polymorpha HOM05D002276 ORTHO05D002381 2.2e-06 57.0 148 28.4
QL10p023509 Quercus lobata HOM05D002276 ORTHO05D002381 2.2e-06 57.0 157 27.4
AT2G38560 Arabidopsis thaliana HOM05D002276 ORTHO05D002381 2.9e-06 56.6 216 26.9
Carub.0004s2055 Capsella rubella HOM05D002276 ORTHO05D002381 3.8e-06 56.2 215 25.6
Cfa020347 Carpinus fangiana HOM05D002276 ORTHO05D002381 3.8e-06 56.2 165 27.3
Ciclev10024181m.g Citrus clementina HOM05D002276 ORTHO05D002381 5.0e-06 55.8 111 31.5
DCAR_018043 Daucus carota HOM05D002276 ORTHO05D002381 5.0e-06 55.8 155 27.7
DCAR_025300 Daucus carota HOM05D002276 ORTHO05D002381 5.0e-06 55.8 154 29.2
ECA232G0035 Erigeron canadensis HOM05D002276 ORTHO05D002381 5.0e-06 55.8 165 26.7
AL4G35840 Arabidopsis lyrata HOM05D002276 ORTHO05D002381 6.5e-06 55.5 216 26.4
Cfa020348 Carpinus fangiana HOM05D002276 ORTHO05D002381 6.5e-06 55.5 165 27.3
Eucgr.A00774 Eucalyptus grandis HOM05D002276 ORTHO05D002381 6.5e-06 55.5 156 27.6
MBI15_g39393_MAGBIO Magnolia biondii HOM05D002276 ORTHO05D002381 6.5e-06 55.5 155 27.1
Cfa021026 Carpinus fangiana HOM05D002276 ORTHO05D002381 8.5e-06 55.1 175 28.0


User provided reference genes

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