Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 3.4e-87 325.1 180 100.0
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 5.6e-13 78.6 180 32.8
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 2.8e-12 76.3 183 33.3
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 3.6e-12 75.9 180 33.9
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 8.0e-12 74.7 179 32.4
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 8.0e-12 74.7 181 33.7
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 1.1e-11 74.3 177 33.9
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.1e-11 74.3 179 31.8
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.4e-11 73.9 179 33.0
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 1.8e-11 73.6 177 33.3
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 2.3e-11 73.2 177 33.3
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 2.3e-11 73.2 184 29.3
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 2.3e-11 73.2 184 29.3
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 3.1e-11 72.8 185 31.9
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.1e-11 72.8 177 31.1
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 4.0e-11 72.4 189 33.9
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 4.0e-11 72.4 189 33.9
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 4.0e-11 72.4 179 33.0
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 4.0e-11 72.4 189 32.3
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 5.2e-11 72.0 181 31.5
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 5.2e-11 72.0 181 30.9
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 5.2e-11 72.0 187 32.6
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 5.2e-11 72.0 182 32.4
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 6.8e-11 71.6 180 31.7
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 6.8e-11 71.6 182 30.8
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 6.8e-11 71.6 181 30.9
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 8.9e-11 71.2 180 31.7
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 8.9e-11 71.2 185 31.9
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 8.9e-11 71.2 175 32.0
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 1.2e-10 70.9 179 33.5
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.5e-10 70.5 175 30.9
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 2.0e-10 70.1 175 32.6
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 2.0e-10 70.1 187 30.5
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 2.0e-10 70.1 175 32.0
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 2.6e-10 69.7 180 32.2
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 2.6e-10 69.7 187 32.1
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 2.6e-10 69.7 93 41.9
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 4.4e-10 68.9 180 31.7
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 5.8e-10 68.6 184 29.9
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 5.8e-10 68.6 177 32.2
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 5.8e-10 68.6 177 32.2
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 5.8e-10 68.6 176 32.4
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 5.8e-10 68.6 178 30.9
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 5.8e-10 68.6 78 44.9
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 5.8e-10 68.6 181 30.9
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 7.5e-10 68.2 178 31.5
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 9.8e-10 67.8 172 31.4
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 9.8e-10 67.8 182 32.4
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 1.3e-09 67.4 177 31.6
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.3e-09 67.4 182 32.4
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 1.3e-09 67.4 178 29.8
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 1.3e-09 67.4 183 30.1
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.7e-09 67.0 72 48.6
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 1.7e-09 67.0 178 31.5
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.7e-09 67.0 185 30.8
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 2.9e-09 66.2 189 31.2
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 2.9e-09 66.2 181 30.4
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 2.9e-09 66.2 176 31.8
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 3.7e-09 65.9 187 29.9
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 3.7e-09 65.9 178 33.1
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 3.7e-09 65.9 188 31.4
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 4.9e-09 65.5 180 29.4
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 4.9e-09 65.5 174 31.6
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 4.9e-09 65.5 172 30.8
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 4.9e-09 65.5 180 33.3
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 6.4e-09 65.1 178 29.2
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 6.4e-09 65.1 188 33.5
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 8.3e-09 64.7 181 29.8
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 8.3e-09 64.7 176 29.5
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.1e-08 64.3 72 44.4
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.1e-08 64.3 187 29.4
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 1.1e-08 64.3 177 29.9
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.4e-08 63.9 166 31.9
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 1.4e-08 63.9 82 42.7
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.4e-08 63.9 72 44.4
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 1.4e-08 63.9 185 29.7
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 1.9e-08 63.5 182 31.9
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 1.9e-08 63.5 182 31.9
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 2.4e-08 63.2 175 32.6
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 3.2e-08 62.8 72 47.2
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 3.2e-08 62.8 72 44.4
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 3.2e-08 62.8 176 30.7
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 3.2e-08 62.8 82 41.5
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 4.1e-08 62.4 72 43.1
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 4.1e-08 62.4 180 31.1
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 5.4e-08 62.0 180 29.4
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 7.0e-08 61.6 81 45.7
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 9.2e-08 61.2 81 45.7
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 9.2e-08 61.2 81 45.7
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 9.2e-08 61.2 175 30.3
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 1.2e-07 60.8 81 43.2
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 1.2e-07 60.8 82 41.5
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 1.2e-07 60.8 68 45.6
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 1.6e-07 60.5 181 29.8
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 2.0e-07 60.1 172 31.4
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 2.0e-07 60.1 177 28.8
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 2.0e-07 60.1 176 29.0
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 2.7e-07 59.7 175 31.4
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 2.7e-07 59.7 176 30.1
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 3.5e-07 59.3 180 28.9
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 3.5e-07 59.3 169 30.2
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 4.6e-07 58.9 85 44.7
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 6.0e-07 58.5 172 33.1
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 1.0e-06 57.8 168 29.8
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 1.0e-06 57.8 176 30.1
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 1.7e-06 57.0 177 27.7
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.7e-06 57.0 176 30.7
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 3.9e-06 55.8 183 27.9
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 6.6e-06 55.1 74 44.6


User provided reference genes

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