Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 7.7e-248 860.1 467 100.0
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 4.3e-81 306.2 431 42.5
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.1e-76 291.6 429 39.9
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 9.2e-76 288.5 453 40.0
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.2e-75 288.1 429 40.8
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.3e-74 284.6 426 40.4
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 5.0e-74 282.7 430 40.0
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 7.3e-73 278.9 430 39.5
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.2e-72 278.1 430 38.4
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 1.6e-72 277.7 434 40.6
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.6e-72 277.7 430 39.5
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.1e-72 277.3 429 38.5
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 2.8e-72 276.9 434 38.9
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 8.1e-72 275.4 430 39.1
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.4e-71 274.6 434 39.6
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 2.3e-71 273.9 430 39.1
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 3.1e-71 273.5 430 38.8
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.5e-70 271.2 434 39.4
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.0e-70 270.8 430 38.6
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.6e-70 270.4 432 39.6
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.6e-70 270.4 430 39.1
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 3.4e-70 270.0 421 39.4
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.4e-70 269.6 432 39.6
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 7.5e-70 268.9 429 38.0
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.8e-70 268.5 434 38.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.7e-69 267.7 432 37.7
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.2e-69 267.3 430 37.9
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 3.7e-69 266.5 436 39.2
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 3.7e-69 266.5 430 38.6
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.9e-69 266.2 430 38.6
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 6.4e-69 265.8 432 38.4
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 6.4e-69 265.8 431 38.5
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 8.3e-69 265.4 429 38.5
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.1e-68 265.0 437 37.3
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.1e-68 265.0 430 38.6
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.9e-68 264.2 432 38.4
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 3.2e-68 263.5 430 38.1
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.1e-68 263.1 429 37.5
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 4.1e-68 263.1 430 38.4
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 5.4e-68 262.7 432 38.7
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 5.4e-68 262.7 431 38.3
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 5.4e-68 262.7 364 43.1
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 7.1e-68 262.3 429 38.0
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 7.1e-68 262.3 429 36.8
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 9.2e-68 261.9 431 38.3
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 9.2e-68 261.9 430 38.4
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.6e-67 261.2 430 38.1
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 1.6e-67 261.2 429 37.3
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 2.1e-67 260.8 432 39.1
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.1e-67 260.8 432 38.7
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.7e-67 260.4 431 38.3
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 2.7e-67 260.4 430 37.9
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 3.5e-67 260.0 434 39.2
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 4.6e-67 259.6 432 38.9
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.0e-67 259.2 430 37.7
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 7.8e-67 258.8 435 38.4
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 1.0e-66 258.5 430 38.1
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.0e-66 258.5 430 37.7
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.3e-66 258.1 430 38.4
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 1.3e-66 258.1 430 38.1
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.3e-66 258.1 430 37.2
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.7e-66 257.7 356 40.4
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.7e-66 257.7 430 37.7
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.7e-66 257.7 432 38.2
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.3e-66 257.3 430 38.6
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 2.3e-66 257.3 432 36.6
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.9e-66 256.5 433 38.3
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 3.9e-66 256.5 430 38.6
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 5.1e-66 256.1 432 37.0
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 5.1e-66 256.1 429 37.1
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 5.1e-66 256.1 429 36.6
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 6.6e-66 255.8 434 37.1
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 8.6e-66 255.4 430 37.4
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 8.6e-66 255.4 432 37.7
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.1e-65 255.0 439 37.4
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.1e-65 255.0 428 37.9
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.9e-65 254.2 433 38.1
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.9e-65 254.2 433 38.1
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.5e-65 253.8 432 38.7
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.5e-65 253.8 434 37.8
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 2.5e-65 253.8 434 37.8
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 3.3e-65 253.4 432 38.2
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.3e-65 253.4 430 37.2
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.3e-65 253.4 430 37.2
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 4.3e-65 253.1 432 38.2
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 4.3e-65 253.1 432 38.2
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 4.3e-65 253.1 432 37.5
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 7.3e-65 252.3 431 38.7
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 7.3e-65 252.3 431 37.4
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 7.3e-65 252.3 432 37.3
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.6e-64 251.1 472 35.8
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 2.1e-64 250.8 431 37.6
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.1e-63 248.4 431 37.6
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.1e-63 248.4 431 37.6
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.4e-63 248.1 431 37.6
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 2.3e-63 247.3 430 38.8
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.3e-63 247.3 429 35.7
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 3.1e-63 246.9 434 37.6
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.8e-63 245.7 429 36.6
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.8e-63 245.7 429 36.6
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 2.6e-62 243.8 431 37.1
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 3.4e-62 243.4 431 37.1
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.4e-62 243.4 432 37.3
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 5.8e-62 242.7 431 37.4
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 5.8e-62 242.7 429 36.1
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 9.9e-62 241.9 430 35.8
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 9.9e-62 241.9 434 37.3
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.9e-61 240.4 431 36.9
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 6.4e-61 239.2 433 35.8
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 6.4e-61 239.2 392 39.3
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 4.1e-60 236.5 464 35.8
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.1e-59 234.2 432 37.7
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 4.6e-59 233.0 357 39.5
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 6.0e-59 232.6 396 39.4
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.3e-58 231.5 444 35.6
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 6.6e-58 229.2 434 35.7
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 8.6e-58 228.8 431 36.4
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 9.6e-57 225.3 362 37.8
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.8e-55 221.1 430 35.1
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 8.9e-55 218.8 430 34.0
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.0e-54 217.6 331 39.0
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.4e-54 216.9 328 41.8
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 2.2e-53 214.2 463 33.3
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.2e-53 214.2 429 33.3
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.9e-52 211.1 317 40.1
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 5.4e-52 209.5 441 34.5
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 2.3e-50 204.1 429 33.8
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.9e-50 203.4 430 33.0
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.5e-49 201.4 439 34.6
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 6.2e-48 196.1 376 35.1
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.9e-45 186.4 416 33.2
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.3e-42 177.6 263 40.3
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-35 155.2 354 33.6
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 3.9e-34 150.2 354 33.3
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.6e-32 144.8 364 31.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 4.0e-31 140.2 243 37.9
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.6e-30 137.5 244 35.7
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 5.8e-30 136.3 358 31.3
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.2e-27 128.6 139 45.3
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.2e-22 112.1 217 36.4
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.5e-17 95.1 157 40.1
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 9.0e-15 85.9 384 24.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 5.9e-14 83.2 201 32.3
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.0e-13 82.4 251 29.5
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.5e-12 76.6 85 40.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.7e-08 65.1 154 30.5
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.8e-08 64.3 201 27.9
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 4.8e-08 63.5 181 29.8
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 2.4e-07 61.2 78 41.0
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 2.4e-07 61.2 78 41.0


User provided reference genes

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