Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 0.0e+00 1254.6 844 100.0
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 2.8e-30 138.3 826 23.7
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 5.6e-23 114.0 798 22.2
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 1.5e-20 105.9 815 22.0
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 2.0e-20 105.5 797 22.1
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 1.3e-19 102.8 800 21.0
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 3.8e-19 101.3 806 23.1
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 8.4e-19 100.1 815 20.5
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.9e-18 99.0 814 20.6
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 1.9e-18 99.0 799 21.5
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 3.2e-18 98.2 814 21.1
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 7.1e-18 97.1 380 26.1
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 3.5e-17 94.7 811 20.7
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 6.0e-17 94.0 810 20.1
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 1.7e-16 92.4 813 19.9
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 1.7e-16 92.4 814 20.6
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.7e-16 92.4 810 20.0
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 3.0e-16 91.7 809 20.0
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 3.0e-16 91.7 812 21.4
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 3.9e-16 91.3 813 20.4
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 6.6e-16 90.5 805 20.4
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 8.7e-16 90.1 804 20.5
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.1e-15 89.7 260 26.5
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 1.5e-15 89.4 813 20.2
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 1.5e-15 89.4 816 20.6
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 1.9e-15 89.0 810 20.0
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 2.5e-15 88.6 815 20.9
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 3.3e-15 88.2 267 27.3
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 4.3e-15 87.8 810 20.5
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 4.3e-15 87.8 817 20.7
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 5.6e-15 87.4 270 28.9
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 5.6e-15 87.4 260 26.9
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 5.6e-15 87.4 806 20.7
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 7.3e-15 87.0 260 26.9
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 9.6e-15 86.7 260 26.9
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 1.6e-14 85.9 813 20.9
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 2.1e-14 85.5 260 26.2
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 2.8e-14 85.1 810 21.2
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 2.8e-14 85.1 264 26.5
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 4.8e-14 84.3 817 19.8
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 6.2e-14 84.0 812 21.6
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 8.1e-14 83.6 817 20.6
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.1e-13 83.2 817 20.4
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.4e-13 82.8 808 19.3
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 1.4e-13 82.8 260 26.5
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 1.8e-13 82.4 391 25.1
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 3.1e-13 81.6 809 19.0
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 3.1e-13 81.6 809 19.0
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 4.0e-13 81.3 260 27.3
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 6.9e-13 80.5 815 20.2
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 6.9e-13 80.5 260 25.8
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 6.9e-13 80.5 376 24.5
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 9.0e-13 80.1 260 25.8
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 1.2e-12 79.7 260 25.8
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 1.5e-12 79.3 805 20.0
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 1.5e-12 79.3 270 27.0
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 1.5e-12 79.3 333 26.4
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 2.0e-12 79.0 816 20.1
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 4.5e-12 77.8 379 24.0
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 5.8e-12 77.4 809 20.3
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 5.8e-12 77.4 804 19.8
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 5.8e-12 77.4 804 19.8
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 5.8e-12 77.4 803 19.3
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 5.8e-12 77.4 812 19.3
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 9.9e-12 76.6 805 19.8
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 9.9e-12 76.6 822 20.3
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.3e-11 76.3 264 26.5
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 1.3e-11 76.3 264 25.8
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 1.3e-11 76.3 98 40.8
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 1.7e-11 75.9 385 24.9
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 1.7e-11 75.9 813 19.3
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 1.7e-11 75.9 804 19.7
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 1.7e-11 75.9 811 19.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 2.2e-11 75.5 374 23.5
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 2.9e-11 75.1 264 26.5
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 3.8e-11 74.7 378 23.0
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 3.8e-11 74.7 260 25.8
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 4.9e-11 74.3 809 20.0
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 6.4e-11 73.9 814 19.0
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 8.4e-11 73.6 804 19.7
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 1.1e-10 73.2 96 39.6
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 1.1e-10 73.2 814 18.9
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 1.4e-10 72.8 813 19.3
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.9e-10 72.4 816 19.5
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 3.2e-10 71.6 260 25.0
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 3.2e-10 71.6 379 23.7
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 3.2e-10 71.6 814 19.0
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 5.4e-10 70.9 797 19.1
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 7.1e-10 70.5 380 23.2
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 9.3e-10 70.1 260 25.4
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 9.3e-10 70.1 811 19.4
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 1.6e-09 69.3 814 20.4
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 2.1e-09 68.9 260 25.4
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 2.1e-09 68.9 801 18.7
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 2.7e-09 68.6 811 18.6
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 2.7e-09 68.6 124 30.6
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 6.0e-09 67.4 265 26.0
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 6.0e-09 67.4 812 19.1
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 7.9e-09 67.0 97 34.0
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 7.9e-09 67.0 274 22.3
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 7.9e-09 67.0 258 25.6
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 7.9e-09 67.0 259 23.6
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 7.9e-09 67.0 124 26.6
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 1.0e-08 66.6 813 18.8
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.0e-08 66.6 181 27.1
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.0e-08 66.6 47 51.1
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 1.3e-08 66.2 809 19.0
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 1.3e-08 66.2 822 18.6
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 2.1e-06 58.9 822 19.0


User provided reference genes

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