Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 0.0e+00 4984.9 4088 100.0
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 2.4e-135 489.6 820 41.2
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 2.8e-128 466.1 822 39.2
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 3.1e-127 462.6 839 39.1
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 5.9e-126 458.4 835 38.9
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 2.2e-125 456.4 861 38.7
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.2e-112 413.3 856 36.6
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 4.2e-108 399.1 839 35.5
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 2.1e-107 396.7 837 36.0
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 8.0e-107 394.8 837 35.6
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 8.8e-106 391.3 818 35.0
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 3.3e-105 389.4 815 35.3
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 7.5e-105 388.3 819 35.5
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 7.5e-105 388.3 819 35.5
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 1.7e-104 387.1 819 35.9
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 4.8e-104 385.6 819 35.3
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 8.2e-104 384.8 818 36.1
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 2.4e-103 383.3 819 34.9
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 4.1e-103 382.5 818 35.0
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 5.3e-103 382.1 668 39.2
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 9.1e-103 381.3 816 35.2
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 2.0e-102 380.2 839 34.7
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 2.0e-102 380.2 861 34.4
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 2.0e-102 380.2 818 35.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 7.7e-102 378.3 836 34.4
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 1.0e-101 377.9 838 34.7
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 1.3e-101 377.5 818 35.0
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 3.8e-101 375.9 818 35.5
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 5.0e-101 375.6 818 34.7
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 5.0e-101 375.6 819 34.8
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 1.1e-100 374.4 817 34.5
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 1.5e-100 374.0 841 34.0
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 1.5e-100 374.0 839 34.6
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 3.2e-100 372.9 817 34.5
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 3.2e-100 372.9 818 34.5
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 4.2e-100 372.5 818 33.6
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 4.2e-100 372.5 818 34.7
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 4.2e-100 372.5 818 35.2
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 5.5e-100 372.1 819 35.0
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 5.5e-100 372.1 839 34.4
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 5.5e-100 372.1 839 34.2
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 7.2e-100 371.7 838 33.3
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 7.2e-100 371.7 818 34.7
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 7.2e-100 371.7 862 34.2
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 9.4e-100 371.3 843 33.5
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 9.4e-100 371.3 818 35.2
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 1.2e-99 370.9 843 33.5
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 1.2e-99 370.9 831 33.8
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 1.2e-99 370.9 818 33.3
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.6e-99 370.5 818 34.5
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 2.1e-99 370.2 818 33.9
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 2.1e-99 370.2 818 34.6
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 2.1e-99 370.2 821 35.3
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 6.1e-99 368.6 847 34.5
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 6.1e-99 368.6 818 34.8
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.0e-99 368.2 818 34.6
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 8.0e-99 368.2 818 34.4
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.0e-98 367.9 839 34.4
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 1.8e-98 367.1 818 33.7
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 4.0e-98 365.9 818 33.9
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 4.0e-98 365.9 858 33.4
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 5.2e-98 365.5 819 33.6
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 1.5e-97 364.0 853 33.2
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 1.5e-97 364.0 818 34.2
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 2.6e-97 363.2 767 35.7
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 5.7e-97 362.1 818 33.6
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 5.7e-97 362.1 817 33.3
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 1.3e-96 360.9 862 33.4
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 2.2e-96 360.1 838 33.4
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 2.8e-96 359.8 818 33.6
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 4.8e-96 359.0 818 33.3
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 3.1e-95 356.3 817 34.0
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 4.1e-95 355.9 818 33.9
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.1e-95 355.9 880 33.1
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 7.0e-95 355.1 846 32.7
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 9.1e-95 354.8 836 33.1
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 1.6e-94 354.0 819 33.6
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 1.0e-93 351.3 833 33.3
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 1.7e-93 350.5 839 32.8
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.7e-93 350.5 819 33.6
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.1e-92 347.8 751 34.5
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 2.5e-92 346.7 825 32.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 5.5e-92 345.5 759 34.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 6.8e-90 338.6 818 32.6
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 6.8e-90 338.6 864 32.4
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 4.4e-89 335.9 818 32.4
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 1.7e-88 334.0 817 31.6
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 3.7e-88 332.8 824 31.2
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 4.9e-88 332.4 827 32.2
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 8.3e-88 331.6 818 31.9
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 1.8e-87 330.5 818 33.3
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 2.9e-85 323.2 843 33.0
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 1.1e-84 321.2 731 33.1
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 7.3e-84 318.5 819 31.4
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 1.2e-83 317.8 819 32.2
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 2.1e-83 317.0 915 30.8
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 3.2e-79 303.1 837 29.5
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 3.3e-76 293.1 888 30.9
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 3.4e-73 283.1 837 31.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 7.8e-70 271.9 820 29.8
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 5.8e-65 255.8 885 28.1
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 4.6e-62 246.1 602 32.7
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 1.5e-57 231.1 615 31.9
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.3e-53 218.0 567 31.6
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 1.5e-52 214.5 594 30.5
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 3.3e-52 213.4 587 31.7
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 9.6e-52 211.8 484 33.3
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.4e-50 208.0 346 38.7
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 8.4e-48 198.7 562 30.8
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 9.3e-47 195.3 759 25.7
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.1e-39 171.8 594 28.1
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 4.6e-38 166.4 423 35.0
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 1.7e-32 147.9 207 45.9
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.2e-31 143.7 142 53.5
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 1.9e-28 134.4 148 52.0
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 5.7e-28 132.9 203 41.9
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.4e-26 128.3 172 44.2
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.5e-25 123.2 203 41.4
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 7.1e-23 115.9 233 35.6
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.5e-22 113.6 235 36.6
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 1.3e-21 111.7 196 40.8
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.0e-21 110.5 636 23.6
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 6.1e-14 86.3 67 58.2
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.0e-13 84.0 463 24.0
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 1.2e-06 62.0 74 37.8


User provided reference genes

Program Settings