Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 4.0e-208 728.0 414 100.0
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 2.9e-57 226.9 298 45.0
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.4e-56 224.6 297 45.1
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 3.2e-56 223.4 297 44.8
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 9.4e-56 221.9 298 45.6
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 1.2e-55 221.5 302 45.0
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 1.6e-55 221.1 316 43.0
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 2.1e-55 220.7 299 45.2
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 3.6e-55 219.9 309 45.0
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 4.6e-55 219.5 317 41.3
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 1.4e-54 218.0 369 39.8
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.8e-54 217.6 307 44.3
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.3e-54 217.2 318 42.8
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 3.9e-54 216.5 295 45.1
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 3.9e-54 216.5 302 43.0
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 5.1e-54 216.1 298 44.3
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 8.8e-54 215.3 309 41.7
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 8.8e-54 215.3 298 43.6
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.5e-53 214.5 307 43.3
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 3.3e-53 213.4 297 44.8
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 3.3e-53 213.4 312 41.3
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 4.4e-53 213.0 300 44.3
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 5.7e-53 212.6 352 41.5
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 5.7e-53 212.6 309 42.7
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 7.4e-53 212.2 318 43.7
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 7.4e-53 212.2 302 42.4
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 1.3e-52 211.5 297 43.4
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 1.3e-52 211.5 297 43.4
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 1.3e-52 211.5 310 42.3
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 1.7e-52 211.1 316 42.4
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 2.2e-52 210.7 308 42.5
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.8e-52 210.3 310 42.3
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 2.8e-52 210.3 310 42.3
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.8e-52 210.3 226 50.4
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 3.7e-52 209.9 309 42.4
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 3.7e-52 209.9 303 42.6
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 3.7e-52 209.9 390 36.2
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 4.8e-52 209.5 297 43.1
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 4.8e-52 209.5 318 41.5
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 6.3e-52 209.1 296 42.9
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 8.2e-52 208.8 357 39.8
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 8.2e-52 208.8 332 40.1
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.1e-51 208.4 308 41.9
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 1.1e-51 208.4 307 43.0
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 1.1e-51 208.4 281 44.5
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.8e-51 207.6 357 39.5
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 2.4e-51 207.2 318 41.2
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 2.4e-51 207.2 297 43.1
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.4e-51 207.2 307 41.0
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 4.1e-51 206.5 310 41.6
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 4.1e-51 206.5 310 41.6
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 4.1e-51 206.5 310 41.6
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 4.1e-51 206.5 405 36.5
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 4.1e-51 206.5 301 42.9
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 5.3e-51 206.1 313 42.2
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 5.3e-51 206.1 292 42.8
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 6.9e-51 205.7 299 43.1
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 6.9e-51 205.7 299 42.8
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 1.2e-50 204.9 299 42.5
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 2.0e-50 204.1 299 43.1
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 4.5e-50 203.0 297 44.1
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 4.5e-50 203.0 299 42.8
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 5.9e-50 202.6 299 42.1
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.3e-49 201.4 299 42.5
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.7e-49 201.1 314 42.0
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 2.9e-49 200.3 297 42.1
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 3.8e-49 199.9 321 39.9
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 3.8e-49 199.9 302 42.4
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 3.8e-49 199.9 298 41.6
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 3.8e-49 199.9 299 42.1
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 6.5e-49 199.1 305 41.0
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 8.5e-49 198.7 313 39.0
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 1.1e-48 198.4 302 40.1
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 1.1e-48 198.4 296 41.6
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.4e-48 198.0 303 41.9
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 1.9e-48 197.6 311 41.2
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.5e-48 197.2 311 41.2
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 3.2e-48 196.8 296 42.6
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 3.2e-48 196.8 310 40.3
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 7.2e-48 195.7 344 38.4
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 7.2e-48 195.7 322 39.4
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.7e-47 193.7 338 37.9
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 3.6e-47 193.4 231 46.8
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 6.1e-47 192.6 309 40.5
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.1e-45 188.3 310 41.6
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 2.0e-45 187.6 350 39.4
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 2.2e-44 184.1 199 51.3
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 3.7e-44 183.3 199 50.8
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 4.8e-44 183.0 284 40.5
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 2.9e-41 173.7 197 49.7
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 2.9e-41 173.7 228 45.2
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 6.5e-41 172.6 303 38.9
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 8.5e-41 172.2 202 47.5
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 1.5e-40 171.4 275 41.1
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 2.5e-40 170.6 199 48.2
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 4.2e-40 169.9 227 42.7
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 2.7e-39 167.2 214 47.2
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 3.0e-38 163.7 242 42.1
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 6.7e-38 162.5 297 37.7
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 2.6e-37 160.6 298 37.6
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.4e-35 154.1 176 49.4
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.1e-35 153.7 188 46.3
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 9.1e-35 152.1 243 42.0
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.5e-34 150.2 185 46.5
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 8.3e-28 129.0 351 31.9
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 8.3e-28 129.0 153 48.4
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.1e-27 128.6 136 53.7
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.1e-24 118.6 350 30.3
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 8.0e-23 112.5 196 38.8
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 3.5e-18 97.1 136 41.2
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 8.9e-14 82.4 147 40.8
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 5.4e-11 73.2 78 51.3
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.2e-10 72.0 76 51.3
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 3.0e-09 67.4 221 29.9
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.9e-08 64.7 173 28.3
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.4e-06 58.5 50 54.0
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 4.0e-06 57.0 52 51.9
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 5.2e-06 56.6 125 32.0


User provided reference genes

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