Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g552001 Chlamydomonas reinhardtii HOM05D001120 ORTHO05D002943 2.1e-291 1005.4 659 100.0
Cre06.g306650 Chlamydomonas reinhardtii HOM05D001120 ORTHO05D002943 1.8e-21 108.6 138 42.8
Lsat_1_v5_gn_8_157341 Lactuca sativa HOM05D001120 ORTHO05D002943 5.0e-19 100.5 356 25.3
Pp3c23_3440 Physcomitrium patens HOM05D001120 ORTHO05D002943 5.5e-18 97.1 222 32.9
PRCOL_00000894 Prasinoderma coloniale HOM05D001120 ORTHO05D002943 8.0e-17 93.2 400 28.0
HanXRQChr02g0052421 Helianthus annuus HOM05D001120 ORTHO05D002943 3.0e-16 91.3 137 40.1
Rhsim09G0194100 Rhododendron simsii HOM05D001120 ORTHO05D002943 1.2e-15 89.4 211 34.6
Aqoxy7G00546 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 2.0e-15 88.6 411 24.3
Lsat_1_v5_gn_8_7961 Lactuca sativa HOM05D001120 ORTHO05D002943 2.0e-15 88.6 393 23.4
ECA233G6122 Erigeron canadensis HOM05D001120 ORTHO05D002943 4.4e-15 87.4 400 23.0
Nn1g01163 Nelumbo nucifera HOM05D001120 ORTHO05D002943 4.4e-15 87.4 234 32.1
FAN06G4681 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.3e-14 85.9 145 40.0
FvH4_7g28430 Fragaria vesca HOM05D001120 ORTHO05D002943 1.7e-14 85.5 145 40.0
HanXRQChr05g0141341 Helianthus annuus HOM05D001120 ORTHO05D002943 2.2e-14 85.1 416 23.1
Cc02_g03730 Coffea canephora HOM05D001120 ORTHO05D002943 3.7e-14 84.3 413 24.2
Medtr6g463380 Medicago truncatula HOM05D001120 ORTHO05D002943 3.7e-14 84.3 225 29.3
unitig_52.g17752 Utricularia gibba HOM05D001120 ORTHO05D002943 3.7e-14 84.3 226 31.0
Migut.F01165 Erythranthe guttata HOM05D001120 ORTHO05D002943 6.3e-14 83.6 412 22.1
Medtr3g006860 Medicago truncatula HOM05D001120 ORTHO05D002943 6.3e-14 83.6 418 22.0
Lalb_Chr25g0289251 Lupinus albus HOM05D001120 ORTHO05D002943 1.1e-13 82.8 418 23.4
Aqoxy5G03662 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 1.4e-13 82.4 163 33.1
Prupe.2G284300 Prunus persica HOM05D001120 ORTHO05D002943 1.4e-13 82.4 407 22.6
MD01G1187900 Malus domestica HOM05D001120 ORTHO05D002943 1.8e-13 82.0 406 22.7
RcHm_v2.0_Chr1g0375401 Rosa chinensis HOM05D001120 ORTHO05D002943 1.8e-13 82.0 418 23.7
vmacro06756 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 1.8e-13 82.0 214 32.2
FAN03G1927 Fragaria x ananassa HOM05D001120 ORTHO05D002943 3.1e-13 81.3 419 23.4
CiPaw.03G098500 Carya illinoinensis HOM05D001120 ORTHO05D002943 4.1e-13 80.9 416 22.8
MELO3C006846.2 Cucumis melo HOM05D001120 ORTHO05D002943 4.1e-13 80.9 414 23.2
Sc19g0001810 Simmondsia chinensis HOM05D001120 ORTHO05D002943 4.1e-13 80.9 233 30.9
arahy.Tifrunner.gnm1.ann1.X1WI1D Arachis hypogaea HOM05D001120 ORTHO05D002943 5.4e-13 80.5 186 32.3
FAN06G3100 Fragaria x ananassa HOM05D001120 ORTHO05D002943 5.4e-13 80.5 419 23.4
FAN10G1418 Fragaria x ananassa HOM05D001120 ORTHO05D002943 5.4e-13 80.5 419 23.4
Gohir.A07G039900 Gossypium hirsutum HOM05D001120 ORTHO05D002943 5.4e-13 80.5 218 31.7
TWI23G0697 Tripterygium wilfordii HOM05D001120 ORTHO05D002943 5.4e-13 80.5 408 22.5
AUR62021289 Chenopodium quinoa HOM05D001120 ORTHO05D002943 7.0e-13 80.1 396 22.0
DCAR_018133 Daucus carota HOM05D001120 ORTHO05D002943 7.0e-13 80.1 211 30.3
VMungo0464G0810 Vigna mungo HOM05D001120 ORTHO05D002943 7.0e-13 80.1 411 23.1
CAN.G1409.5 Capsicum annuum HOM05D001120 ORTHO05D002943 9.2e-13 79.7 216 31.0
CBR_g433 Chara braunii HOM05D001120 ORTHO05D002943 9.2e-13 79.7 68 57.4
Ciclev10004987m.g Citrus clementina HOM05D001120 ORTHO05D002943 9.2e-13 79.7 227 31.3
ATR0757G141 Amborella trichopoda HOM05D001120 ORTHO05D002943 1.2e-12 79.3 214 30.8
arahy.Tifrunner.gnm1.ann1.16TVZ1 Arachis hypogaea HOM05D001120 ORTHO05D002943 1.2e-12 79.3 411 21.4
MSTRG.27147 Avicennia marina HOM05D001120 ORTHO05D002943 1.2e-12 79.3 418 22.2
DCAR_007088 Daucus carota HOM05D001120 ORTHO05D002943 1.2e-12 79.3 180 31.1
FAN01G0606 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.2e-12 79.3 419 23.2
Solyc03g007000.4 Solanum lycopersicum HOM05D001120 ORTHO05D002943 1.2e-12 79.3 212 30.2
CSS0048489 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 1.6e-12 79.0 213 31.9
Mapoly0030s0021 Marchantia polymorpha HOM05D001120 ORTHO05D002943 1.6e-12 79.0 228 26.8
QL12p039198 Quercus lobata HOM05D001120 ORTHO05D002943 1.6e-12 79.0 226 30.5
Hund04661 Selenicereus undatus HOM05D001120 ORTHO05D002943 1.6e-12 79.0 408 23.8
Sopen03g003000 Solanum pennellii HOM05D001120 ORTHO05D002943 1.6e-12 79.0 212 30.2
AagrBONN_evm.TU.Sc2ySwM_117.1247 Anthoceros agrestis HOM05D001120 ORTHO05D002943 2.0e-12 78.6 205 30.2
Thhalv10013554m.g Eutrema salsugineum HOM05D001120 ORTHO05D002943 2.0e-12 78.6 225 30.2
FAN03G1503 Fragaria x ananassa HOM05D001120 ORTHO05D002943 2.0e-12 78.6 419 23.2
Glyma.09G151800 Glycine max HOM05D001120 ORTHO05D002943 2.0e-12 78.6 215 29.8
Phvul.011G124600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 2.0e-12 78.6 226 30.5
CANSAT21G0609 Cannabis sativa HOM05D001120 ORTHO05D002943 2.7e-12 78.2 231 29.9
CANSAT21G2509 Cannabis sativa HOM05D001120 ORTHO05D002943 2.7e-12 78.2 231 29.9
Potri.012G131100 Populus trichocarpa HOM05D001120 ORTHO05D002943 2.7e-12 78.2 397 22.7
Actinidia13529 Actinidia chinensis HOM05D001120 ORTHO05D002943 3.5e-12 77.8 199 30.7
Haze_13809 Corylus avellana HOM05D001120 ORTHO05D002943 3.5e-12 77.8 408 23.8
Dinv28521 Davidia involucrata HOM05D001120 ORTHO05D002943 3.5e-12 77.8 418 22.5
Lj6g0021937 Lotus japonicus HOM05D001120 ORTHO05D002943 3.5e-12 77.8 396 23.2
Psat1g105640 Pisum sativum HOM05D001120 ORTHO05D002943 3.5e-12 77.8 218 27.5
arahy.Tifrunner.gnm1.ann1.0ZDL97 Arachis hypogaea HOM05D001120 ORTHO05D002943 4.5e-12 77.4 411 21.2
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 4.5e-12 77.4 408 23.5
ClCG05G007580 Citrullus lanatus HOM05D001120 ORTHO05D002943 4.5e-12 77.4 230 28.7
FvH4_7g28431 Fragaria vesca HOM05D001120 ORTHO05D002943 4.5e-12 77.4 238 29.0
PGSC0003DMG400031017 Solanum tuberosum HOM05D001120 ORTHO05D002943 4.5e-12 77.4 212 30.2
EL10Ac3g05764 Beta vulgaris HOM05D001120 ORTHO05D002943 5.9e-12 77.0 414 21.5
Cpa.g.sc3.252 Carica papaya HOM05D001120 ORTHO05D002943 5.9e-12 77.0 409 22.7
PGR042G0858 Punica granatum HOM05D001120 ORTHO05D002943 5.9e-12 77.0 418 22.0
TAR375G0839 Trochodendron aralioides HOM05D001120 ORTHO05D002943 5.9e-12 77.0 415 23.1
AL8G26010 Arabidopsis lyrata HOM05D001120 ORTHO05D002943 7.7e-12 76.6 219 30.1
Sed0024680 Sechium edule HOM05D001120 ORTHO05D002943 7.7e-12 76.6 228 28.9
AT5G51740 Arabidopsis thaliana HOM05D001120 ORTHO05D002943 1.0e-11 76.3 214 30.4
BcaC04g20640 Brassica carinata HOM05D001120 ORTHO05D002943 1.0e-11 76.3 226 31.0
C09p41150 Brassica napus HOM05D001120 ORTHO05D002943 1.0e-11 76.3 226 31.0
BolC9t56993H Brassica oleracea HOM05D001120 ORTHO05D002943 1.0e-11 76.3 226 31.0
CDE11G0287 Ceratophyllum demersum HOM05D001120 ORTHO05D002943 1.0e-11 76.3 225 29.3
AUR62016080 Chenopodium quinoa HOM05D001120 ORTHO05D002943 1.0e-11 76.3 278 24.5
Ca_19532_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 1.0e-11 76.3 201 30.3
Eucgr.A02865 Eucalyptus grandis HOM05D001120 ORTHO05D002943 1.0e-11 76.3 240 29.2
Rhsim03G0173300 Rhododendron simsii HOM05D001120 ORTHO05D002943 1.0e-11 76.3 243 30.0
Ah.13g067550 Amaranthus hybridus HOM05D001120 ORTHO05D002943 1.3e-11 75.9 219 28.8
BcaB08g35521 Brassica carinata HOM05D001120 ORTHO05D002943 1.3e-11 75.9 226 30.5
Dinv08003 Davidia involucrata HOM05D001120 ORTHO05D002943 1.3e-11 75.9 407 23.6
Duzib084G0753 Durio zibethinus HOM05D001120 ORTHO05D002943 1.3e-11 75.9 418 22.5
ECA233G0610 Erigeron canadensis HOM05D001120 ORTHO05D002943 1.3e-11 75.9 79 48.1
CSS0024775 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 1.7e-11 75.5 227 29.5
CARHR264600 Cardamine hirsuta HOM05D001120 ORTHO05D002943 1.7e-11 75.5 218 29.4
FAN06G0193 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.7e-11 75.5 108 38.0
FAN06G0604 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.7e-11 75.5 246 28.5
Hma1.2p1_0488F.1_g163780 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 1.7e-11 75.5 235 28.9
HPP92_007982 Vanilla planifolia HOM05D001120 ORTHO05D002943 1.7e-11 75.5 211 28.9
VMungo1127G0245 Vigna mungo HOM05D001120 ORTHO05D002943 1.7e-11 75.5 194 30.4
Aa31LG3G8190 Aethionema arabicum HOM05D001120 ORTHO05D002943 2.3e-11 75.1 227 30.4
Carub.0008s1176 Capsella rubella HOM05D001120 ORTHO05D002943 2.3e-11 75.1 236 28.0
Gohir.D09G174300 Gossypium hirsutum HOM05D001120 ORTHO05D002943 2.3e-11 75.1 223 28.7
Gorai.006G196300 Gossypium raimondii HOM05D001120 ORTHO05D002943 2.3e-11 75.1 223 28.7
Manes.06G139500 Manihot esculenta HOM05D001120 ORTHO05D002943 2.3e-11 75.1 409 22.5
Nitab4.5_0006353g0020 Nicotiana tabacum HOM05D001120 ORTHO05D002943 2.3e-11 75.1 240 29.2
A10p09590 Brassica napus HOM05D001120 ORTHO05D002943 2.9e-11 74.7 226 30.5
BraA10t43035Z Brassica rapa HOM05D001120 ORTHO05D002943 2.9e-11 74.7 226 30.5
Os02g0735100 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002943 2.9e-11 74.7 218 28.4
Phvul.004G125600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 2.9e-11 74.7 411 22.1
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 2.9e-11 74.7 229 28.4
SMO172G0194 Selaginella moellendorffii HOM05D001120 ORTHO05D002943 2.9e-11 74.7 68 51.5
GSVIVG01018475001 Vitis vinifera HOM05D001120 ORTHO05D002943 2.9e-11 74.7 266 25.6
PSO832G4332 Papaver somniferum HOM05D001120 ORTHO05D002943 3.8e-11 74.3 164 32.3
MD07G1260500 Malus domestica HOM05D001120 ORTHO05D002943 5.0e-11 73.9 219 27.4
Nitab4.5_0000072g0150 Nicotiana tabacum HOM05D001120 ORTHO05D002943 5.0e-11 73.9 240 28.8
Gohir.A09G178700 Gossypium hirsutum HOM05D001120 ORTHO05D002943 6.6e-11 73.6 223 28.7
THA.LOC104806528 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 6.6e-11 73.6 231 30.3
THA.LOC104811503 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 6.6e-11 73.6 462 24.0
arahy.Tifrunner.gnm1.ann1.Q1XR2M Arachis hypogaea HOM05D001120 ORTHO05D002943 8.6e-11 73.2 70 50.0
PSO478G4258 Papaver somniferum HOM05D001120 ORTHO05D002943 8.6e-11 73.2 226 29.6
Lj2g0010051 Lotus japonicus HOM05D001120 ORTHO05D002943 1.1e-10 72.8 207 28.5
Oeu021740.1 Olea europaea HOM05D001120 ORTHO05D002943 1.5e-10 72.4 77 46.8
FAN06G2540 Fragaria x ananassa HOM05D001120 ORTHO05D002943 2.5e-10 71.6 207 28.5
Peaxi162Scf00192g00835 Petunia axillaris HOM05D001120 ORTHO05D002943 2.5e-10 71.6 234 27.8
Glyma.06G289600 Glycine max HOM05D001120 ORTHO05D002943 3.3e-10 71.2 414 22.2
PSO478G1970 Papaver somniferum HOM05D001120 ORTHO05D002943 5.6e-10 70.5 66 51.5
PSO782G1143 Papaver somniferum HOM05D001120 ORTHO05D002943 5.6e-10 70.5 66 51.5
Eucgr.A02866 Eucalyptus grandis HOM05D001120 ORTHO05D002943 7.3e-10 70.1 178 31.5
PSO210G7235 Papaver somniferum HOM05D001120 ORTHO05D002943 7.3e-10 70.1 157 29.9
Glyma.12G117400 Glycine max HOM05D001120 ORTHO05D002943 9.5e-10 69.7 230 29.1
PSO782G3773 Papaver somniferum HOM05D001120 ORTHO05D002943 1.6e-09 68.9 104 41.3
HanXRQChr04g0116241 Helianthus annuus HOM05D001120 ORTHO05D002943 2.8e-09 68.2 135 34.8
Medtr6g061650 Medicago truncatula HOM05D001120 ORTHO05D002943 3.6e-09 67.8 188 33.0
Cfa021686 Carpinus fangiana HOM05D001120 ORTHO05D002943 6.1e-09 67.0 156 35.9
FAN06G2717 Fragaria x ananassa HOM05D001120 ORTHO05D002943 8.0e-09 66.6 115 38.3
MBI12_g37712_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002943 8.0e-09 66.6 416 21.9
FvH4_7g28432 Fragaria vesca HOM05D001120 ORTHO05D002943 1.8e-08 65.5 132 32.6
arahy.Tifrunner.gnm1.ann1.XVWX7G Arachis hypogaea HOM05D001120 ORTHO05D002943 3.0e-08 64.7 82 40.2
FAN10G3067 Fragaria x ananassa HOM05D001120 ORTHO05D002943 5.2e-08 63.9 114 37.7
arahy.Tifrunner.gnm1.ann1.B50YZX Arachis hypogaea HOM05D001120 ORTHO05D002943 6.8e-08 63.5 77 42.9
Hund11789 Selenicereus undatus HOM05D001120 ORTHO05D002943 6.8e-08 63.5 419 20.3
Gohir.D07G044000 Gossypium hirsutum HOM05D001120 ORTHO05D002943 8.9e-08 63.2 195 30.8
vmacro09881 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 8.9e-08 63.2 79 46.8
HanXRQChr03g0061581 Helianthus annuus HOM05D001120 ORTHO05D002943 1.5e-07 62.4 49 57.1
SGA_v2.0_scaffold10G05437 Striga asiatica HOM05D001120 ORTHO05D002943 1.5e-07 62.4 70 45.7
CSS0048333 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 2.6e-07 61.6 199 29.1
CsaV3_3G016470 Cucumis sativus L. HOM05D001120 ORTHO05D002943 2.6e-07 61.6 204 28.9
Rhsim07G0024900 Rhododendron simsii HOM05D001120 ORTHO05D002943 2.6e-07 61.6 156 28.8
Rhsim07G0025300 Rhododendron simsii HOM05D001120 ORTHO05D002943 2.6e-07 61.6 208 27.9
DCAR_032343 Daucus carota HOM05D001120 ORTHO05D002943 3.4e-07 61.2 156 30.1
Rhsim07G0025100 Rhododendron simsii HOM05D001120 ORTHO05D002943 3.4e-07 61.2 151 31.1
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 4.4e-07 60.8 212 25.0
SEGI_40718 Sequoiadendron giganteum HOM05D001120 ORTHO05D002943 4.4e-07 60.8 199 26.1
arahy.Tifrunner.gnm1.ann1.BDNL9H Arachis hypogaea HOM05D001120 ORTHO05D002943 5.7e-07 60.5 62 46.8
EL10Ac3g05118 Beta vulgaris HOM05D001120 ORTHO05D002943 5.7e-07 60.5 159 30.2
Thecc.03G163900 Theobroma cacao HOM05D001120 ORTHO05D002943 5.7e-07 60.5 49 57.1
MD07G1015000 Malus domestica HOM05D001120 ORTHO05D002943 7.5e-07 60.1 193 23.8
Medtr1g014390 Medicago truncatula HOM05D001120 ORTHO05D002943 7.5e-07 60.1 148 29.7
SalBow2G0050 Salvia bowleyana HOM05D001120 ORTHO05D002943 7.5e-07 60.1 162 30.2
Gorai.001G047100 Gossypium raimondii HOM05D001120 ORTHO05D002943 9.8e-07 59.7 54 50.0
COL.COLO4_05158 Corchorus olitorius HOM05D001120 ORTHO05D002943 1.3e-06 59.3 107 39.3
Hma1.2p1_0033F.1_g020890 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 1.3e-06 59.3 64 43.8
unitig_92.g28185 Utricularia gibba HOM05D001120 ORTHO05D002943 1.3e-06 59.3 101 34.7
Lj8C35G5 Lonicera japonica HOM05D001120 ORTHO05D002943 2.2e-06 58.5 199 28.1
vmacro13381 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 4.9e-06 57.4 150 28.0
COL.COLO4_30184 Corchorus olitorius HOM05D001120 ORTHO05D002943 8.3e-06 56.6 72 41.7


User provided reference genes

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