Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 0.0e+00 3528.8 2537 100.0
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.2e-65 257.3 2707 26.6
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 3.3e-58 232.6 2618 22.9
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 6.6e-51 208.4 1050 26.0
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 8.0e-49 201.4 484 32.2
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 3.1e-48 199.5 475 33.7
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 4.0e-48 199.1 1054 25.1
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 5.2e-48 198.7 484 32.0
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 1.2e-47 197.6 989 24.7
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 2.0e-47 196.8 1055 24.7
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 2.0e-47 196.8 478 33.1
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 3.4e-47 196.1 482 31.7
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 5.8e-47 195.3 478 33.3
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 7.5e-47 194.9 1095 25.3
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 1.3e-46 194.1 1027 25.4
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 2.9e-46 193.0 1048 25.3
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 6.4e-46 191.8 488 32.6
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 1.4e-45 190.7 475 32.4
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 1.9e-45 190.3 488 32.4
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 1.9e-45 190.3 474 31.9
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 3.2e-45 189.5 475 32.4
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 2.0e-44 186.8 994 24.9
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 6.0e-44 185.3 1006 24.9
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 1.0e-43 184.5 713 26.8
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 1.7e-43 183.7 1013 24.3
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.3e-43 183.3 1113 24.8
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 2.3e-43 183.3 1017 24.8
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.9e-43 182.6 2585 22.4
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 1.5e-42 180.6 1083 24.7
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 1.9e-42 180.3 1089 25.0
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 3.3e-42 179.5 1021 24.2
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 3.3e-42 179.5 719 27.0
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 4.3e-42 179.1 1075 24.7
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 9.5e-42 177.9 1067 24.3
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 1.2e-41 177.6 845 25.8
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 2.1e-41 176.8 644 28.3
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.1e-41 176.8 462 31.2
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 2.1e-41 176.8 2587 21.5
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 2.8e-41 176.4 1010 24.9
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 2.8e-41 176.4 1025 23.5
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 4.7e-41 175.6 1047 25.0
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 6.2e-41 175.3 705 27.8
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 8.0e-41 174.9 1011 24.1
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.3e-40 173.3 1044 24.4
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 2.3e-40 173.3 1051 24.9
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 2.3e-40 173.3 721 25.7
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 3.1e-40 172.9 814 25.7
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 4.0e-40 172.6 718 27.3
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 5.2e-40 172.2 1030 23.5
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 6.8e-40 171.8 1016 25.5
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 6.8e-40 171.8 1044 24.6
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 6.8e-40 171.8 712 26.4
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 8.9e-40 171.4 1019 24.5
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 2.0e-39 170.2 1018 25.1
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 2.0e-39 170.2 1094 24.6
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 2.6e-39 169.9 721 26.6
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 7.5e-39 168.3 1099 24.8
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 7.5e-39 168.3 1014 23.9
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 9.8e-39 167.9 1005 25.0
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 2.2e-38 166.8 719 27.8
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 2.9e-38 166.4 1061 24.6
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 4.9e-38 165.6 1019 23.6
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 1.1e-37 164.5 1092 24.0
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 1.9e-37 163.7 2568 20.9
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 2.4e-37 163.3 843 25.6
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 4.1e-37 162.5 475 31.2
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 9.2e-37 161.4 1115 25.7
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.2e-36 161.0 1025 24.2
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 1.6e-36 160.6 1020 24.0
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 2.1e-36 160.2 478 29.9
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 2.1e-36 160.2 738 27.2
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.7e-36 159.8 1088 23.8
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 4.6e-36 159.1 1122 24.6
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 6.0e-36 158.7 1060 24.8
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 7.8e-36 158.3 1011 23.4
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.7e-35 157.1 489 29.7
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 2.3e-35 156.8 1088 23.5
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 6.6e-35 155.2 1026 24.1
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 8.6e-35 154.8 709 26.4
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 8.6e-35 154.8 1024 24.3
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 1.1e-34 154.5 1014 23.7
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 1.9e-34 153.7 1024 24.3
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 2.5e-34 153.3 477 30.0
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 2.5e-34 153.3 484 30.0
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.3e-34 152.5 1023 24.2
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 7.3e-34 151.8 478 30.1
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 7.3e-34 151.8 412 31.3
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 9.5e-34 151.4 1009 24.3
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.5e-34 151.4 400 31.8
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 1.2e-33 151.0 1076 23.8
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 1.6e-33 150.6 1050 23.8
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.6e-33 149.4 478 29.7
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 8.1e-33 148.3 717 25.9
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.4e-32 147.5 381 30.2
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 3.1e-32 146.4 736 25.3
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 8.9e-32 144.8 351 31.1
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 1.2e-31 144.4 364 31.0
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 2.0e-31 143.7 305 33.4
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 2.0e-31 143.7 485 28.2
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 4.4e-31 142.5 306 32.7
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 5.8e-31 142.1 306 32.7
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 2.2e-30 140.2 367 31.1
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 3.7e-30 139.4 489 29.4
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 6.4e-30 138.7 1119 22.9
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 8.3e-30 138.3 193 40.9
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.1e-29 136.0 423 29.1
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 1.0e-27 131.3 2578 21.5
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 3.0e-27 129.8 276 32.2
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 8.6e-27 128.3 199 39.7
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 3.3e-26 126.3 367 28.3
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 5.2e-24 119.0 2623 21.2
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 6.8e-24 118.6 2441 21.1
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 7.6e-23 115.2 477 26.2
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 4.9e-22 112.5 203 36.9
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 4.9e-22 112.5 2646 21.3
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 6.4e-22 112.1 2587 20.0
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 6.4e-22 112.1 2645 21.1
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.4e-21 110.9 192 39.1
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 9.2e-21 108.2 2616 21.0
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 5.1e-19 102.4 2602 20.6
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 8.7e-19 101.7 99 52.5
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 3.3e-18 99.8 2608 20.9
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 1.1e-16 94.7 100 49.0
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.4e-16 94.4 93 51.6
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 1.8e-16 94.0 2593 21.0
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 9.0e-16 91.7 2603 20.4
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 2.6e-15 90.1 112 45.5
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 1.3e-14 87.8 359 26.7
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 2.9e-14 86.7 368 25.3
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 6.4e-14 85.5 2591 20.4
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 1.0e-11 78.2 2615 20.1
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.1e-11 75.9 372 25.5
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 5.1e-11 75.9 2585 20.0
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 8.7e-11 75.1 2609 20.1
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 2.5e-10 73.6 2593 20.8
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 9.6e-10 71.6 210 31.4
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 1.1e-08 68.2 2577 20.0
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 1.1e-08 68.2 2592 20.8
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.0e-08 66.2 348 25.3


User provided reference genes

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