Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g546250 Chlamydomonas reinhardtii HOM05D005373 ORTHO05D006617 1.3e-41 172.9 111 100.0
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 1.0e-17 93.6 75 57.3
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 1.8e-17 92.8 75 53.3
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 2.3e-17 92.4 75 54.7
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 2.3e-17 92.4 75 56.0
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 3.9e-17 91.7 75 54.7
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 3.9e-17 91.7 75 54.7
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 3.9e-17 91.7 75 56.0
PRCOL_00002130 Prasinoderma coloniale HOM05D005373 ORTHO05D006617 6.7e-17 90.9 82 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 8.7e-17 90.5 75 53.3
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 8.7e-17 90.5 75 54.7
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 8.7e-17 90.5 75 53.3
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 1.1e-16 90.1 75 53.3
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 1.1e-16 90.1 75 52.0
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 1.1e-16 90.1 88 46.6
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 1.1e-16 90.1 75 53.3
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 1.1e-16 90.1 75 54.7
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 53.3
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 53.3
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 53.3
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 53.3
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 53.3
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 53.3
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 52.0
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 52.0
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 52.0
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 1.5e-16 89.7 75 53.3
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 1.9e-16 89.4 75 53.3
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 1.9e-16 89.4 75 53.3
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 1.9e-16 89.4 75 53.3
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 1.9e-16 89.4 75 53.3
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 1.9e-16 89.4 75 50.7
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 1.9e-16 89.4 75 53.3
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 2.5e-16 89.0 75 53.3
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 2.5e-16 89.0 75 50.7
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 2.5e-16 89.0 75 53.3
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 2.5e-16 89.0 75 53.3
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 3.3e-16 88.6 75 52.0
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 3.3e-16 88.6 75 53.3
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 3.3e-16 88.6 75 53.3
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 3.3e-16 88.6 75 53.3
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 3.3e-16 88.6 75 53.3
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 3.3e-16 88.6 75 52.0
Hma1.2p1_1029F.1_g249680 Hydrangea macrophylla HOM05D005373 ORTHO05D006617 3.3e-16 88.6 75 53.3
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 3.3e-16 88.6 75 53.3
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 4.3e-16 88.2 75 52.0
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 4.3e-16 88.2 75 53.3
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 4.3e-16 88.2 75 52.0
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 4.3e-16 88.2 75 53.3
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 4.3e-16 88.2 75 52.0
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 4.3e-16 88.2 75 52.0
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 5.7e-16 87.8 75 52.0
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 5.7e-16 87.8 75 52.0
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 5.7e-16 87.8 75 52.0
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 5.7e-16 87.8 75 53.3
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 5.7e-16 87.8 75 52.0
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 7.4e-16 87.4 75 50.7
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 7.4e-16 87.4 75 52.0
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 7.4e-16 87.4 75 53.3
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 9.7e-16 87.0 75 50.7
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 9.7e-16 87.0 75 52.0
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 9.7e-16 87.0 75 50.7
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 9.7e-16 87.0 75 53.3
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 9.7e-16 87.0 75 49.3
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 9.7e-16 87.0 75 50.7
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 50.7
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 50.7
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 50.7
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 50.7
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 52.0
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 52.0
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 52.0
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 52.0
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 49.3
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 52.0
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 49.3
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 49.3
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 1.3e-15 86.7 75 49.3
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.6e-15 86.3 75 52.0
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.6e-15 86.3 75 52.0
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 1.6e-15 86.3 75 52.0
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 1.6e-15 86.3 75 50.7
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 2.2e-15 85.9 75 49.3
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 2.2e-15 85.9 75 52.0
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 2.2e-15 85.9 75 52.0
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 2.2e-15 85.9 75 50.7
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 2.2e-15 85.9 75 50.7
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 2.2e-15 85.9 75 50.7
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 2.2e-15 85.9 75 49.3
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 50.7
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 49.3
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 49.3
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 50.7
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 49.3
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 49.3
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 49.3
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 50.7
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 50.7
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 50.7
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 50.7
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 2.8e-15 85.5 75 52.0
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 49.3
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 50.7
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 49.3
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 49.3
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 48.0
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 49.3
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 48.0
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 48.0
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 3.7e-15 85.1 77 50.6
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 3.7e-15 85.1 75 49.3
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 4.8e-15 84.7 75 49.3
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 4.8e-15 84.7 75 49.3
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 4.8e-15 84.7 75 48.0
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 4.8e-15 84.7 75 49.3
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 4.8e-15 84.7 75 50.7
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 4.8e-15 84.7 75 49.3
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 4.8e-15 84.7 75 49.3
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 6.3e-15 84.3 75 49.3
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 6.3e-15 84.3 75 48.0
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 6.3e-15 84.3 75 48.0
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 6.3e-15 84.3 75 48.0
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 8.2e-15 84.0 73 52.1
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 8.2e-15 84.0 81 49.4
CBR_g18652 Chara braunii HOM05D005373 ORTHO05D006617 1.8e-14 82.8 74 50.0
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 1.8e-14 82.8 75 49.3
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 2.4e-14 82.4 75 48.0
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 5.9e-13 77.8 60 55.0
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 1.9e-11 72.8 101 38.6
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 3.2e-11 72.0 56 55.4
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 4.2e-11 71.6 101 37.6
Atru.chr7.944 Acer truncatum HOM05D005373 ORTHO05D006617 7.9e-10 67.4 54 53.7
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 7.9e-10 67.4 48 62.5
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 7.9e-10 67.4 48 62.5
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 2.8e-07 58.9 138 28.3
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 6.3e-07 57.8 75 41.3


User provided reference genes

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