Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 6.5e-260 900.2 456 100.0
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 9.3e-174 614.0 420 71.2
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 9.3e-174 614.0 430 71.4
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.6e-173 613.2 417 72.7
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 1.3e-172 610.1 420 71.9
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.3e-172 610.1 430 71.2
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 2.3e-172 609.4 413 72.9
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 2.3e-172 609.4 413 72.9
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 6.7e-172 607.8 454 67.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 4.3e-171 605.1 419 71.4
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 9.7e-171 604.0 433 69.1
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 1.6e-170 603.2 407 73.2
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 1.6e-170 603.2 413 70.9
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 1.6e-170 603.2 459 66.0
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 2.8e-170 602.4 416 71.6
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 3.7e-170 602.1 420 70.5
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 3.7e-170 602.1 415 70.4
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 3.7e-170 602.1 413 71.9
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 3.7e-170 602.1 447 66.9
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 4.8e-170 601.7 420 70.5
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 4.8e-170 601.7 418 71.1
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 6.3e-170 601.3 413 71.2
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 6.3e-170 601.3 451 67.8
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 1.1e-169 600.5 437 68.6
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 1.1e-169 600.5 437 68.6
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 1.1e-169 600.5 415 71.3
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.1e-169 600.5 450 66.7
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.4e-169 600.1 434 68.0
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 1.4e-169 600.1 414 71.3
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 1.4e-169 600.1 442 69.0
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.8e-169 599.7 411 72.5
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 1.8e-169 599.7 427 69.3
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 2.4e-169 599.4 437 68.6
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 2.4e-169 599.4 421 70.5
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 2.4e-169 599.4 428 68.7
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 2.4e-169 599.4 419 69.9
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 3.1e-169 599.0 441 68.7
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 3.1e-169 599.0 413 71.4
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 3.1e-169 599.0 413 70.9
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 4.1e-169 598.6 421 70.8
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 4.1e-169 598.6 415 70.8
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 5.3e-169 598.2 438 68.7
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 5.3e-169 598.2 419 69.9
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 5.3e-169 598.2 413 70.9
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 5.3e-169 598.2 407 72.0
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 6.9e-169 597.8 430 70.0
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 9.0e-169 597.4 441 68.5
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.2e-168 597.0 424 69.6
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 1.5e-168 596.7 413 70.5
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.5e-168 596.7 407 71.5
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.0e-168 596.3 406 71.4
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 2.0e-168 596.3 408 71.1
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 2.6e-168 595.9 406 71.7
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 3.4e-168 595.5 405 71.9
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 4.5e-168 595.1 406 71.9
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 4.5e-168 595.1 412 70.9
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.5e-168 595.1 412 70.9
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 5.9e-168 594.7 424 68.4
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 5.9e-168 594.7 406 71.9
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 5.9e-168 594.7 409 71.1
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 5.9e-168 594.7 409 71.1
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 5.9e-168 594.7 409 71.1
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 5.9e-168 594.7 405 72.1
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 5.9e-168 594.7 405 72.6
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 7.6e-168 594.3 419 69.9
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 7.6e-168 594.3 405 72.1
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 7.6e-168 594.3 405 71.9
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 1.7e-167 593.2 412 70.9
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 1.7e-167 593.2 405 70.4
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.7e-167 593.2 428 67.8
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.2e-167 592.8 405 71.4
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 2.2e-167 592.8 407 70.8
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 2.2e-167 592.8 429 69.5
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.8e-167 592.0 430 68.4
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.8e-167 592.0 430 68.4
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 3.8e-167 592.0 405 71.6
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 5.0e-167 591.7 430 68.6
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 5.0e-167 591.7 438 68.5
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 5.0e-167 591.7 436 68.8
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 1.1e-166 590.5 406 70.7
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 1.9e-166 589.7 413 70.5
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 1.9e-166 589.7 421 69.4
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 1.9e-166 589.7 438 68.0
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 1.9e-166 589.7 413 69.7
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 2.5e-166 589.3 413 70.2
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 2.5e-166 589.3 414 71.0
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 5.5e-166 588.2 433 68.6
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 7.2e-166 587.8 413 69.7
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 9.3e-166 587.4 431 68.2
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 9.3e-166 587.4 435 67.8
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.6e-165 586.6 405 71.6
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.6e-165 586.6 405 71.6
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 2.1e-165 586.3 405 70.6
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 2.7e-165 585.9 406 70.4
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 2.7e-165 585.9 412 69.2
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 2.7e-165 585.9 419 68.7
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 3.6e-165 585.5 461 65.5
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 1.0e-164 583.9 413 70.7
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.0e-164 583.9 412 68.9
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 1.0e-164 583.9 405 69.9
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 1.0e-164 583.9 435 67.4
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 1.3e-164 583.6 435 67.6
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 1.8e-164 583.2 414 68.8
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.3e-164 582.8 431 65.9
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.9e-164 582.0 420 69.0
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 3.9e-164 582.0 430 67.4
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 6.7e-164 581.3 428 66.8
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 6.7e-164 581.3 416 69.0
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 1.1e-163 580.5 429 67.8
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.1e-163 580.5 405 70.1
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.3e-163 578.6 454 65.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 7.4e-163 577.8 412 70.4
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 9.7e-163 577.4 406 70.0
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.6e-162 576.6 425 68.0
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.2e-162 576.2 418 68.2
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 2.8e-162 575.9 405 69.9
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 3.7e-162 575.5 415 68.9
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.3e-162 574.7 478 62.8
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.3e-162 574.7 454 64.3
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 8.2e-162 574.3 428 66.8
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.1e-161 573.9 407 68.3
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.1e-161 573.9 411 69.1
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 1.4e-161 573.5 420 68.3
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.8e-161 573.2 454 63.9
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 1.8e-161 573.2 433 66.3
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 6.9e-161 571.2 408 67.9
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 9.1e-161 570.9 446 64.8
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.0e-159 567.4 448 65.2
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 2.9e-159 565.8 412 68.7
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 8.5e-159 564.3 405 66.9
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 7.2e-158 561.2 405 66.2
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 2.7e-157 559.3 419 65.4
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 6.1e-157 558.1 369 72.6
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 1.4e-156 557.0 406 65.8
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.3e-156 556.2 435 66.4
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 5.1e-156 555.1 410 65.1
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 5.1e-156 555.1 370 72.4
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 6.7e-156 554.7 427 63.9
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 2.6e-155 552.7 406 64.8
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 7.4e-155 551.2 406 65.5
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 9.7e-155 550.8 407 63.6
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 2.8e-154 549.3 406 65.3
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.5e-152 543.5 448 63.4
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 2.0e-152 543.1 417 62.1
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 1.0e-148 530.8 414 64.7
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 3.0e-148 529.3 452 61.5
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 5.2e-140 501.9 415 60.0
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 1.5e-139 500.4 405 62.7
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 4.4e-139 498.8 406 65.3
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.3e-138 497.3 347 69.5
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.4e-137 493.8 337 72.1
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 2.9e-135 486.1 327 73.1
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 5.5e-134 481.9 311 74.0
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 1.6e-133 480.3 366 66.7
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 4.5e-128 462.2 314 72.0
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 7.3e-118 428.3 402 58.2
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 1.1e-113 414.5 288 70.5
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 2.4e-113 413.3 317 68.8
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 8.4e-90 335.1 238 70.6
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 9.9e-83 311.6 250 61.6
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 1.1e-76 291.6 182 74.7
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.9e-74 283.5 182 73.1
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.1e-69 267.3 214 66.8
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.8e-68 264.2 169 72.2
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 5.8e-67 259.2 257 54.1
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 5.6e-62 242.7 360 39.2
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 3.0e-55 220.3 223 55.2
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 8.7e-55 218.8 174 63.8
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 8.2e-53 212.2 156 70.5
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 5.5e-49 199.5 188 56.9
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.5e-46 190.7 380 35.5
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 6.9e-44 182.6 141 63.1
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 1.4e-36 158.3 156 55.1
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 4.4e-30 136.7 71 91.5
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 3.3e-22 110.5 75 72.0
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 6.8e-15 86.3 64 64.1
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 1.3e-13 82.0 73 53.4
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 2.5e-09 67.8 47 63.8
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 5.5e-09 66.6 49 69.4
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 9.5e-09 65.9 164 34.8
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 6.1e-08 63.2 37 75.7
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.1e-08 63.2 99 43.4


User provided reference genes

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