Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 0.0e+00 1114.0 551 100.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 9.3e-152 541.2 528 52.3
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 2.3e-150 536.6 529 52.6
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.0e-150 536.2 528 51.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 6.7e-150 535.0 528 52.7
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.1e-149 534.3 533 51.8
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.5e-149 533.9 535 52.3
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.9e-149 533.5 533 51.6
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 5.6e-149 531.9 528 52.1
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.3e-148 530.8 537 51.6
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.3e-148 530.8 534 51.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.3e-148 530.8 528 52.1
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.1e-148 530.0 528 51.7
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 2.1e-148 530.0 528 51.9
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.8e-148 529.6 531 51.2
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 3.7e-148 529.3 528 51.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 4.8e-148 528.9 543 50.6
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.8e-148 528.9 537 51.6
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 4.8e-148 528.9 537 51.6
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 6.2e-148 528.5 528 51.5
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 8.1e-148 528.1 528 51.1
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.1e-148 528.1 537 51.6
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.1e-148 528.1 544 50.7
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 8.1e-148 528.1 528 52.1
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.1e-147 527.7 530 51.7
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.1e-147 527.7 528 51.3
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.4e-147 527.3 546 50.7
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.4e-147 527.3 528 52.1
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.8e-147 526.9 533 51.0
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.8e-147 526.9 528 52.3
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.4e-147 526.6 528 51.3
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.1e-147 526.2 527 51.8
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 3.1e-147 526.2 528 51.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.0e-147 525.8 537 51.0
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.0e-147 525.8 537 52.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 6.9e-147 525.0 528 50.9
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 9.0e-147 524.6 528 50.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.2e-146 524.2 528 50.9
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.5e-146 523.9 528 51.1
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.5e-146 523.9 544 50.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.5e-146 523.9 528 52.3
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.5e-146 523.9 528 50.4
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.6e-146 523.1 544 50.2
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.6e-146 523.1 532 50.2
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 2.6e-146 523.1 528 52.5
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.6e-146 523.1 530 52.1
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 3.4e-146 522.7 529 51.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 3.4e-146 522.7 528 50.4
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 3.4e-146 522.7 528 51.9
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 4.5e-146 522.3 532 51.5
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 5.8e-146 521.9 528 51.3
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 5.8e-146 521.9 528 51.7
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 7.6e-146 521.5 531 51.2
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 9.9e-146 521.2 527 51.2
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 9.9e-146 521.2 518 52.5
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 9.9e-146 521.2 528 52.3
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.3e-145 520.8 531 50.5
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.3e-145 520.8 528 50.9
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.7e-145 520.4 531 51.0
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.7e-145 520.4 538 50.4
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.9e-145 519.6 529 51.0
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.9e-145 519.6 529 50.9
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 4.9e-145 518.8 528 51.7
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 4.9e-145 518.8 533 50.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 6.4e-145 518.5 541 51.2
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 6.4e-145 518.5 535 50.3
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 6.4e-145 518.5 528 51.1
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 6.4e-145 518.5 529 51.2
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 6.4e-145 518.5 531 50.5
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.1e-144 517.7 515 51.7
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.1e-144 517.7 528 50.9
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.1e-144 517.7 528 52.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.4e-144 517.3 537 52.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.9e-144 516.9 528 50.9
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.4e-144 516.5 535 50.1
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 2.4e-144 516.5 539 49.7
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.2e-144 516.2 535 50.1
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 5.5e-144 515.4 530 50.9
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 5.5e-144 515.4 528 50.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 7.1e-144 515.0 528 50.8
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 9.3e-144 514.6 531 50.3
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.6e-143 513.8 532 51.5
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.6e-143 513.8 528 51.5
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 2.1e-143 513.5 528 50.2
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 2.7e-143 513.1 531 50.7
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 2.7e-143 513.1 529 49.9
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 3.5e-143 512.7 537 51.8
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 4.6e-143 512.3 528 50.4
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 6.0e-143 511.9 531 50.3
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 7.9e-143 511.5 526 50.6
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.9e-143 511.5 528 50.9
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.9e-143 511.5 530 50.6
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.9e-143 511.5 530 50.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.0e-142 511.1 530 51.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.3e-142 510.8 529 51.0
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 5.1e-142 508.8 529 50.5
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 6.7e-142 508.4 528 50.2
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 8.7e-142 508.1 534 50.0
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 8.7e-142 508.1 528 49.8
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.5e-141 507.3 535 50.5
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.9e-141 506.9 533 50.1
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.9e-141 506.9 556 49.8
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.5e-141 506.5 532 50.0
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.3e-141 506.1 535 49.5
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.3e-141 505.8 543 49.5
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 9.6e-141 504.6 539 49.5
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.8e-140 503.1 529 49.9
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.8e-140 503.1 563 48.5
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.4e-139 500.0 528 50.2
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 7.6e-138 495.0 445 55.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 7.4e-133 478.4 485 52.4
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 6.9e-131 471.9 485 50.7
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 9.3e-128 461.5 403 57.1
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 6.1e-127 458.8 485 50.5
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 4.3e-125 452.6 479 50.5
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.8e-124 449.9 485 49.5
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.1e-123 446.4 485 49.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.8e-118 430.6 626 42.0
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.9e-118 429.5 536 46.1
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.2e-113 413.7 537 43.0
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 2.7e-111 406.8 449 49.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.0e-109 400.6 526 45.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.6e-98 364.4 401 49.4
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 8.5e-97 358.6 423 46.3
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.7e-93 345.9 266 63.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.1e-91 341.7 536 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.4e-91 340.5 236 67.8
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-90 337.8 427 45.0
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 4.5e-90 336.3 237 67.1
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.5e-88 330.5 508 41.5
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 3.7e-84 316.6 236 62.7
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.0e-81 308.5 434 42.6
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 5.0e-81 306.2 387 45.2
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.0e-69 267.7 267 52.4
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 3.2e-67 260.4 304 47.4
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 8.6e-65 252.3 322 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.3e-62 244.2 474 34.6
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-53 215.3 244 48.8
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 7.6e-53 212.6 249 46.6
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.1e-47 194.5 298 39.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 9.0e-46 189.1 280 41.4
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.8e-42 176.0 335 35.5
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 4.3e-40 170.2 280 36.4
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 3.8e-36 157.1 94 73.4
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 6.4e-36 156.4 260 37.7
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 3.2e-35 154.1 94 70.2
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.2e-35 153.7 94 73.4
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.5e-27 126.7 160 46.9
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.5e-24 118.6 181 37.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 2.5e-24 117.9 169 37.3
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 5.6e-24 116.7 75 72.0
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.2e-20 104.8 164 36.6
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.9e-19 101.7 111 46.8
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 3.1e-14 84.3 291 26.5
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.2e-13 82.4 85 51.8
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 7.7e-13 79.7 79 48.1
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 2.2e-12 78.2 132 34.1
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.4e-11 75.5 181 30.4
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 1.8e-09 68.6 92 43.5
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.2e-07 61.6 51 56.9


User provided reference genes

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