Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g525500 Chlamydomonas reinhardtii HOM05D005083 ORTHO05D006310 0.0e+00 1989.5 1137 100.0
Mapoly0036s0123 Marchantia polymorpha HOM05D005083 ORTHO05D006310 3.0e-64 251.5 717 29.8
Pp3c8_20000 Physcomitrium patens HOM05D005083 ORTHO05D006310 8.8e-64 250.0 753 28.3
Pp3c23_1190 Physcomitrium patens HOM05D005083 ORTHO05D006310 8.3e-62 243.4 711 29.8
SMO361G0655 Selaginella moellendorffii HOM05D005083 ORTHO05D006310 7.0e-61 240.4 712 29.4
Cc09_g04250 Coffea canephora HOM05D005083 ORTHO05D006310 2.9e-59 235.0 699 29.0
AagrBONN_evm.TU.Sc2ySwM_228.1094 Anthoceros agrestis HOM05D005083 ORTHO05D006310 1.5e-58 232.6 864 27.5
AL6G28480 Arabidopsis lyrata HOM05D005083 ORTHO05D006310 5.5e-58 230.7 717 27.2
MSTRG.8186 Avicennia marina HOM05D005083 ORTHO05D006310 7.2e-58 230.3 703 28.0
Carub.0006s1563 Capsella rubella HOM05D005083 ORTHO05D006310 7.2e-58 230.3 720 27.6
THA.LOC104820850 Tarenaya hassleriana HOM05D005083 ORTHO05D006310 1.6e-57 229.2 700 28.4
CARHR195800 Cardamine hirsuta HOM05D005083 ORTHO05D006310 6.1e-57 227.3 717 27.1
CsaV3_3G003930 Cucumis sativus L. HOM05D005083 ORTHO05D006310 1.8e-56 225.7 709 28.1
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 4.0e-56 224.6 716 27.4
AT5G17410 Arabidopsis thaliana HOM05D005083 ORTHO05D006310 5.2e-56 224.2 717 27.2
BcaB01g04935 Brassica carinata HOM05D005083 ORTHO05D006310 8.8e-56 223.4 717 27.5
Duzib128G0478 Durio zibethinus HOM05D005083 ORTHO05D006310 8.8e-56 223.4 688 28.1
Thhalv10012868m.g Eutrema salsugineum HOM05D005083 ORTHO05D006310 1.5e-55 222.6 721 27.6
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 5.7e-55 220.7 709 27.8
Gohir.D01G094500 Gossypium hirsutum HOM05D005083 ORTHO05D006310 7.5e-55 220.3 740 27.4
Pp3c13_20560 Physcomitrium patens HOM05D005083 ORTHO05D006310 1.3e-54 219.5 639 28.8
Pp3c13_20568 Physcomitrium patens HOM05D005083 ORTHO05D006310 1.3e-54 219.5 639 28.8
QL08p044788 Quercus lobata HOM05D005083 ORTHO05D006310 2.2e-54 218.8 703 28.3
ATR1096G007 Amborella trichopoda HOM05D005083 ORTHO05D006310 2.8e-54 218.4 751 27.0
PGSC0003DMG400019714 Solanum tuberosum HOM05D005083 ORTHO05D006310 3.7e-54 218.0 703 29.0
PGR119G1162 Punica granatum HOM05D005083 ORTHO05D006310 4.9e-54 217.6 720 28.2
SEGI_29727 Sequoiadendron giganteum HOM05D005083 ORTHO05D006310 4.9e-54 217.6 705 28.2
Gorai.002G119900 Gossypium raimondii HOM05D005083 ORTHO05D006310 8.3e-54 216.9 740 27.3
Sopen02g026100 Solanum pennellii HOM05D005083 ORTHO05D006310 8.3e-54 216.9 703 29.0
Solyc02g081460.4 Solanum lycopersicum HOM05D005083 ORTHO05D006310 1.4e-53 216.1 702 28.9
Atru.chr12.1671 Acer truncatum HOM05D005083 ORTHO05D006310 1.8e-53 215.7 702 27.9
Lsat_1_v5_gn_2_27601 Lactuca sativa HOM05D005083 ORTHO05D006310 1.8e-53 215.7 729 27.3
Aa31LG11G12310 Aethionema arabicum HOM05D005083 ORTHO05D006310 2.4e-53 215.3 796 26.0
BcaB01g05202 Brassica carinata HOM05D005083 ORTHO05D006310 4.1e-53 214.5 773 26.9
HanXRQChr14g0433021 Helianthus annuus HOM05D005083 ORTHO05D006310 5.4e-53 214.2 738 26.7
Prupe.7G036600 Prunus persica HOM05D005083 ORTHO05D006310 9.1e-53 213.4 706 27.5
Zm00001eb425980 Zea mays HOM05D005083 ORTHO05D006310 9.1e-53 213.4 786 26.8
A03p08290 Brassica napus HOM05D001138 ORTHO05D006310 1.2e-52 213.0 670 27.9
Nitab4.5_0001308g0170 Nicotiana tabacum HOM05D005083 ORTHO05D006310 1.2e-52 213.0 718 27.6
HPP92_018347 Vanilla planifolia HOM05D005083 ORTHO05D006310 1.2e-52 213.0 708 28.2
C03p09650 Brassica napus HOM05D001138 ORTHO05D006310 1.6e-52 212.6 670 27.6
BraA03t10156Z Brassica rapa HOM05D005083 ORTHO05D006310 2.7e-52 211.8 724 27.1
CAN.G809.91 Capsicum annuum HOM05D005083 ORTHO05D006310 2.7e-52 211.8 713 28.5
Os04g0501700 Oryza sativa ssp. japonica HOM05D005083 ORTHO05D006310 2.7e-52 211.8 799 26.4
Potri.010G180700 Populus trichocarpa HOM05D005083 ORTHO05D006310 2.7e-52 211.8 711 27.3
Sc16g0010610 Simmondsia chinensis HOM05D005083 ORTHO05D006310 3.5e-52 211.5 664 28.6
Hund07372 Selenicereus undatus HOM05D005083 ORTHO05D006310 4.5e-52 211.1 708 28.5
Aqoxy3G04197 Aquilegia oxysepala HOM05D005083 ORTHO05D006310 7.7e-52 210.3 771 26.6
RcHm_v2.0_Chr3g0447481 Rosa chinensis HOM05D005083 ORTHO05D006310 7.7e-52 210.3 706 27.8
Lj4A702T41 Lonicera japonica HOM05D005083 ORTHO05D006310 1.0e-51 209.9 645 27.4
CSS0010526 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 1.3e-51 209.5 711 27.6
CiPaw.07G085600 Carya illinoinensis HOM05D005083 ORTHO05D006310 1.3e-51 209.5 691 28.1
Thecc.05G188600 Theobroma cacao HOM05D005083 ORTHO05D006310 1.3e-51 209.5 599 29.0
BolC9t58815H Brassica oleracea HOM05D005083 ORTHO05D006310 1.7e-51 209.1 683 27.8
GSVIVG01032444001 Vitis vinifera HOM05D005083 ORTHO05D006310 1.7e-51 209.1 702 27.6
PSO210G3440 Papaver somniferum HOM05D005083 ORTHO05D006310 2.3e-51 208.8 703 27.9
CANSAT54G2676 Cannabis sativa HOM05D005083 ORTHO05D006310 5.0e-51 207.6 705 27.2
CSS0033222 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 1.5e-50 206.1 699 27.6
TPR.G28978 Trifolium pratense HOM05D005083 ORTHO05D006310 1.9e-50 205.7 648 28.4
EL10Ac4g10018 Beta vulgaris HOM05D005083 ORTHO05D006310 3.3e-50 204.9 610 28.7
Cfa006235 Carpinus fangiana HOM05D005083 ORTHO05D006310 3.3e-50 204.9 659 28.1
Ca_30805_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 5.6e-50 204.1 599 29.0
Nn1g09878 Nelumbo nucifera HOM05D005083 ORTHO05D006310 7.2e-50 203.8 586 29.7
Actinidia06798 Actinidia chinensis HOM05D005083 ORTHO05D006310 9.5e-50 203.4 703 27.0
Rhsim05G0167600 Rhododendron simsii HOM05D005083 ORTHO05D006310 9.5e-50 203.4 734 27.0
CSS0048819 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 1.2e-49 203.0 699 27.2
Eucgr.B01438 Eucalyptus grandis HOM05D005083 ORTHO05D006310 1.2e-49 203.0 704 28.3
FvH4_6g00120 Fragaria vesca HOM05D005083 ORTHO05D006310 2.1e-49 202.2 732 27.2
AUR62000278 Chenopodium quinoa HOM05D005083 ORTHO05D006310 2.8e-49 201.8 809 26.2
Migut.F01835 Erythranthe guttata HOM05D005083 ORTHO05D006310 3.6e-49 201.4 587 28.8
MD14G1089300 Malus domestica HOM05D005083 ORTHO05D006310 6.1e-49 200.7 703 27.0
TAR375G0465 Trochodendron aralioides HOM05D005083 ORTHO05D006310 8.0e-49 200.3 650 27.5
VMungo0331G1409 Vigna mungo HOM05D005083 ORTHO05D006310 8.0e-49 200.3 648 27.8
MCO10G199 Micromonas commoda HOM05D005083 ORTHO05D006310 1.0e-48 199.9 974 26.7
MELO3C014078.2 Cucumis melo HOM05D005083 ORTHO05D006310 1.4e-48 199.5 749 26.0
Glyma.03G090100 Glycine max HOM05D005083 ORTHO05D006310 1.4e-48 199.5 612 28.6
C09p59750 Brassica napus HOM05D005083 ORTHO05D006310 1.8e-48 199.1 723 27.0
Lj1g0009175 Lotus japonicus HOM05D005083 ORTHO05D006310 1.8e-48 199.1 656 27.9
Medtr8g011450 Medicago truncatula HOM05D005083 ORTHO05D006310 1.8e-48 199.1 656 28.0
Phvul.010G031700 Phaseolus vulgaris HOM05D005083 ORTHO05D006310 1.8e-48 199.1 648 27.5
Psat4g206560 Pisum sativum HOM05D005083 ORTHO05D006310 1.8e-48 199.1 689 27.9
AUR62006625 Chenopodium quinoa HOM05D005083 ORTHO05D006310 3.0e-48 198.4 828 25.8
PSO832G1645 Papaver somniferum HOM05D005083 ORTHO05D006310 5.2e-48 197.6 711 27.6
ClCG10G004080 Citrullus lanatus HOM05D005083 ORTHO05D006310 6.8e-48 197.2 746 26.1
Peaxi162Scf00253g00621 Petunia axillaris HOM05D005083 ORTHO05D006310 7.5e-47 193.7 590 28.3
Glyma.16G082900 Glycine max HOM05D005083 ORTHO05D006310 1.3e-46 193.0 648 27.0
Lalb_Chr03g0041081 Lupinus albus HOM05D005083 ORTHO05D006310 1.3e-46 193.0 751 25.4
BolC3t13463H Brassica oleracea HOM05D005083 ORTHO05D006310 1.7e-46 192.6 778 26.0
Nitab4.5_0002233g0090 Nicotiana tabacum HOM05D005083 ORTHO05D006310 4.9e-46 191.0 742 27.2
Nitab4.5_0000842g0030 Nicotiana tabacum HOM05D005083 ORTHO05D006310 6.4e-46 190.7 742 26.7
FAN09G1831 Fragaria x ananassa HOM05D005083 ORTHO05D006310 1.1e-45 189.9 745 26.6
Ciclev10004486m.g Citrus clementina HOM05D005083 ORTHO05D006310 7.0e-45 187.2 605 27.6
Manes.13G001400 Manihot esculenta HOM05D005083 ORTHO05D006310 1.2e-44 186.4 603 28.2
Haze_04595 Corylus avellana HOM05D005083 ORTHO05D006310 2.0e-44 185.7 648 27.6
arahy.Tifrunner.gnm1.ann1.PCAY5Y Arachis hypogaea HOM05D005083 ORTHO05D006310 3.5e-44 184.9 559 27.4
FAN02G1711 Fragaria x ananassa HOM05D005083 ORTHO05D006310 4.6e-44 184.5 653 26.5
Dinv15379 Davidia involucrata HOM05D005083 ORTHO05D006310 7.8e-44 183.7 820 26.2
arahy.Tifrunner.gnm1.ann1.1T2QZ7 Arachis hypogaea HOM05D005083 ORTHO05D006310 1.0e-43 183.3 559 27.5
PRCOL_00000469 Prasinoderma coloniale HOM05D005083 ORTHO05D006310 1.0e-43 183.3 769 27.3
CDE08G0008 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 3.9e-43 181.4 688 25.7
Sp6g26810 Schrenkiella parvula HOM05D005083 ORTHO05D006310 6.6e-43 180.6 720 25.7
Atru.chr4.1877 Acer truncatum HOM05D005083 ORTHO05D006310 7.3e-42 177.2 473 29.4
MBI18_g24480_MAGBIO Magnolia biondii HOM05D005083 ORTHO05D006310 1.4e-40 172.9 714 26.9
Ca_23185_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 2.3e-40 172.2 375 32.3
Oeu062030.2 Olea europaea HOM05D005083 ORTHO05D006310 2.3e-40 172.2 561 27.5
Ah.06g195270 Amaranthus hybridus HOM05D005083 ORTHO05D006310 3.7e-38 164.9 706 25.2
TWI36G0321 Tripterygium wilfordii HOM05D005083 ORTHO05D006310 3.7e-38 164.9 702 26.4
HanXRQChr03g0062031 Helianthus annuus HOM05D005083 ORTHO05D006310 2.7e-36 158.7 474 27.8
Gohir.A01G108100 Gossypium hirsutum HOM05D005083 ORTHO05D006310 6.0e-36 157.5 739 24.1
SGA_v2.0_scaffold122G33218 Striga asiatica HOM05D005083 ORTHO05D006310 7.8e-36 157.1 451 29.5
COL.COLO4_36604 Corchorus olitorius HOM05D005083 ORTHO05D006310 5.2e-32 144.4 533 26.5
Glyma.20G051200 Glycine max HOM05D005083 ORTHO05D006310 2.2e-30 139.0 488 27.0
CBR_g50761 Chara braunii HOM05D005083 ORTHO05D006310 6.4e-30 137.5 384 28.9
BcaB08g36773 Brassica carinata HOM05D005083 ORTHO05D006310 1.7e-27 129.4 606 24.9
Cfa026615 Carpinus fangiana HOM05D005083 ORTHO05D006310 3.3e-26 125.2 532 25.9
MBI18_g11247_MAGBIO Magnolia biondii HOM05D005083 ORTHO05D006310 5.6e-26 124.4 296 31.1
CDE02G0214 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 2.1e-25 122.5 671 23.5
vmacro11193 Vaccinium macrocarpon HOM05D005083 ORTHO05D006310 4.0e-24 118.2 589 24.1
SalBow6G5693 Salvia bowleyana HOM05D005083 ORTHO05D006310 6.8e-24 117.5 276 30.1
unitig_22.g6621 Utricularia gibba HOM05D005083 ORTHO05D006310 8.9e-24 117.1 333 28.5
A10p22000 Brassica napus HOM05D005083 ORTHO05D006310 2.4e-16 92.4 309 26.5
SHI07636 Sapria himalayana HOM05D005083 ORTHO05D006310 6.4e-14 84.3 192 32.3
BraA10t44257Z Brassica rapa HOM05D005083 ORTHO05D006310 7.8e-12 77.4 529 21.4
Lsat_1_v5_gn_1_124700 Lactuca sativa HOM05D005083 ORTHO05D006310 7.3e-10 70.9 148 33.8
PRCOL_00005400 Prasinoderma coloniale HOM05D004581 ORTHO05D006211 9.6e-10 70.5 479 27.3
RcHm_v2.0_Chr4g0425031 Rosa chinensis HOM05D005083 ORTHO05D006310 2.1e-09 69.3 152 30.3
HanXRQChr03g0062021 Helianthus annuus HOM05D005083 ORTHO05D006310 3.1e-08 65.5 181 26.5
TAR362G0022 Trochodendron aralioides HOM05D005083 ORTHO05D006310 5.3e-08 64.7 389 23.9
BraA03t14759Z Brassica rapa HOM05D005083 ORTHO05D006310 2.6e-07 62.4 139 30.9
ECA247G1565 Erigeron canadensis HOM05D004581 ORTHO05D006211 1.3e-06 60.1 345 23.2
MCO03G564 Micromonas commoda HOM05D004581 ORTHO05D006211 2.2e-06 59.3 269 23.0


User provided reference genes

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