Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g511600 Chlamydomonas reinhardtii HOM05D003769 ORTHO05D004521 0.0e+00 2654.8 1495 100.0
PRCOL_00000007 Prasinoderma coloniale HOM05D003769 ORTHO05D004521 1.2e-23 117.1 269 30.9
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 2.5e-13 82.8 403 24.1
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 1.6e-12 80.1 323 23.2
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 1.6e-12 80.1 323 23.2
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 2.1e-12 79.7 267 25.8
Cre07.g352900 Chlamydomonas reinhardtii HOM05D003769 ORTHO05D004521 2.7e-12 79.3 264 25.0
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 2.7e-12 79.3 292 27.4
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 3.5e-12 79.0 292 27.4
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 4.6e-12 78.6 292 27.1
Psat7g012720 Pisum sativum HOM05D003769 ORTHO05D004521 4.6e-12 78.6 133 37.6
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 6.0e-12 78.2 131 35.9
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 6.0e-12 78.2 373 23.6
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 7.9e-12 77.8 131 36.6
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 1.3e-11 77.0 131 36.6
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 1.3e-11 77.0 329 24.0
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 1.8e-11 76.6 273 26.4
Duzib084G0296 Durio zibethinus HOM05D003769 ORTHO05D004521 3.0e-11 75.9 407 22.9
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 3.0e-11 75.9 413 23.0
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 5.1e-11 75.1 131 35.9
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 5.1e-11 75.1 131 34.4
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 6.7e-11 74.7 131 35.1
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 6.7e-11 74.7 287 26.1
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 8.7e-11 74.3 140 32.9
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 1.1e-10 73.9 280 24.3
AagrBONN_evm.TU.Sc2ySwM_368.2777 Anthoceros agrestis HOM05D003769 ORTHO05D004521 1.5e-10 73.6 124 33.1
Aqoxy3G00338 Aquilegia oxysepala HOM05D003769 ORTHO05D004521 1.9e-10 73.2 405 21.7
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 1.9e-10 73.2 131 35.1
TAR629G2778 Trochodendron aralioides HOM05D003769 ORTHO05D004521 1.9e-10 73.2 140 32.9
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 2.5e-10 72.8 140 32.9
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 2.5e-10 72.8 140 34.3
TPR.G32677 Trifolium pratense HOM05D003769 ORTHO05D004521 2.5e-10 72.8 131 35.1
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 2.5e-10 72.8 131 34.4
Cpa.g.sc13.14 Carica papaya HOM05D003769 ORTHO05D004521 3.3e-10 72.4 131 32.8
Cfa019795 Carpinus fangiana HOM05D003769 ORTHO05D004521 3.3e-10 72.4 131 33.6
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 4.3e-10 72.0 131 35.1
Solyc03g119650.3 Solanum lycopersicum HOM05D003769 ORTHO05D004521 4.3e-10 72.0 131 35.1
Sopen03g038480 Solanum pennellii HOM05D003769 ORTHO05D004521 4.3e-10 72.0 131 35.1
CANSAT80G0780 Cannabis sativa HOM05D003769 ORTHO05D004521 5.7e-10 71.6 131 32.8
MCO16G541 Micromonas commoda HOM05D003769 ORTHO05D004521 5.7e-10 71.6 54 55.6
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 5.7e-10 71.6 223 26.5
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 5.7e-10 71.6 123 33.3
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 7.4e-10 71.2 132 32.6
Dinv07347 Davidia involucrata HOM05D003769 ORTHO05D004521 7.4e-10 71.2 131 34.4
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 7.4e-10 71.2 124 32.3
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 7.4e-10 71.2 131 33.6
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 7.4e-10 71.2 129 34.9
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 9.6e-10 70.9 123 32.5
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 9.6e-10 70.9 216 25.9
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 9.6e-10 70.9 122 34.4
FvH4_5g12450 Fragaria vesca HOM05D003769 ORTHO05D004521 9.6e-10 70.9 132 32.6
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 9.6e-10 70.9 132 32.6
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 9.6e-10 70.9 132 32.6
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 1.3e-09 70.5 230 27.0
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 1.3e-09 70.5 131 34.4
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 1.3e-09 70.5 131 34.4
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 1.6e-09 70.1 131 33.6
unitig_8.g3058 Utricularia gibba HOM05D003769 ORTHO05D004521 1.6e-09 70.1 119 35.3
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 2.1e-09 69.7 121 36.4
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 2.1e-09 69.7 354 24.3
Sed0003499 Sechium edule HOM05D003769 ORTHO05D004521 2.1e-09 69.7 131 33.6
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 2.8e-09 69.3 140 31.4
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 3.7e-09 68.9 214 28.0
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 3.7e-09 68.9 140 31.4
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 6.3e-09 68.2 140 31.4
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 6.3e-09 68.2 132 32.6
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 8.2e-09 67.8 211 25.6
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 8.2e-09 67.8 211 26.1
TWI81G0419 Tripterygium wilfordii HOM05D003769 ORTHO05D004521 8.2e-09 67.8 210 26.2
VMungo0251G1242 Vigna mungo HOM05D003769 ORTHO05D004521 8.2e-09 67.8 100 40.0
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 1.1e-08 67.4 211 25.6
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 1.1e-08 67.4 211 25.6
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 1.1e-08 67.4 211 25.6
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 1.1e-08 67.4 211 25.6
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 1.1e-08 67.4 211 25.6
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 1.1e-08 67.4 127 31.5
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 1.4e-08 67.0 116 35.3
HanXRQChr17g0558431 Helianthus annuus HOM05D003769 ORTHO05D004521 1.8e-08 66.6 119 32.8
PGR083G2820 Punica granatum HOM05D003769 ORTHO05D004521 1.8e-08 66.6 214 25.7
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 1.8e-08 66.6 131 30.5
Actinidia31020 Actinidia chinensis HOM05D003769 ORTHO05D004521 2.4e-08 66.2 218 27.5
Thhalv10011186m.g Eutrema salsugineum HOM05D003769 ORTHO05D004521 2.4e-08 66.2 230 25.7
FvH4_5g12360 Fragaria vesca HOM05D003769 ORTHO05D004521 2.4e-08 66.2 132 32.6
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 2.4e-08 66.2 131 32.1
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 3.1e-08 65.9 119 32.8
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 3.1e-08 65.9 211 26.1
Duzib068G0584 Durio zibethinus HOM05D003769 ORTHO05D004521 3.1e-08 65.9 214 25.2
Lsat_1_v5_gn_8_146581 Lactuca sativa HOM05D003769 ORTHO05D004521 3.1e-08 65.9 119 32.8
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 3.1e-08 65.9 121 35.5
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 4.1e-08 65.5 140 30.7
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 5.3e-08 65.1 117 32.5
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 5.3e-08 65.1 118 33.1
arahy.Tifrunner.gnm1.ann1.9P0TZR Arachis hypogaea HOM05D003769 ORTHO05D004521 6.9e-08 64.7 92 41.3
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 9.0e-08 64.3 211 25.6
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 9.0e-08 64.3 210 26.2
SalBow6G1269 Salvia bowleyana HOM05D002012 ORTHO05D001992 9.0e-08 64.3 80 41.2
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 1.2e-07 63.9 100 37.0
Sabra02G0194200 Salix brachista HOM05D002012 ORTHO05D001992 1.5e-07 63.5 73 42.5
EL10Ac8g19105 Beta vulgaris HOM05D002012 ORTHO05D001992 2.0e-07 63.2 92 35.9
Lj1C76G4 Lonicera japonica HOM05D002012 ORTHO05D001992 2.0e-07 63.2 76 40.8
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 2.6e-07 62.8 222 25.7
vmacro02714 Vaccinium macrocarpon HOM05D002012 ORTHO05D001992 2.6e-07 62.8 81 40.7
DCAR_026766 Daucus carota HOM05D002012 ORTHO05D001992 3.4e-07 62.4 92 34.8
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 3.4e-07 62.4 235 25.5
MBI07_g21078_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 3.4e-07 62.4 73 42.5
Peaxi162Scf00517g00034 Petunia axillaris HOM05D002012 ORTHO05D001992 3.4e-07 62.4 76 40.8
arahy.Tifrunner.gnm1.ann1.A9KR6W Arachis hypogaea HOM05D003769 ORTHO05D004521 5.9e-07 61.6 109 37.6
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 5.9e-07 61.6 92 37.0
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 5.9e-07 61.6 92 37.0
MBI04_g48188_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 5.9e-07 61.6 99 34.3
Potri.002G255500 Populus trichocarpa HOM05D002012 ORTHO05D001992 5.9e-07 61.6 73 41.1
Lalb_Chr25g0289781 Lupinus albus HOM05D002012 ORTHO05D001992 7.6e-07 61.2 67 38.8
unitig_21.g20983 Utricularia gibba HOM05D002012 ORTHO05D001992 7.6e-07 61.2 95 34.7
Actinidia30117 Actinidia chinensis HOM05D002012 ORTHO05D001992 1.0e-06 60.8 66 40.9
Gohir.A07G203700 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.0e-06 60.8 74 41.9
Glyma.13G109600 Glycine max HOM05D002012 ORTHO05D001992 1.3e-06 60.5 166 28.3
Gohir.D07G209700 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.3e-06 60.5 74 40.5
Gorai.001G237100 Gossypium raimondii HOM05D002012 ORTHO05D001992 1.3e-06 60.5 74 40.5
Manes.13G038800 Manihot esculenta HOM05D002012 ORTHO05D001992 1.3e-06 60.5 73 39.7
ECA234G2093 Erigeron canadensis HOM05D002012 ORTHO05D001992 1.7e-06 60.1 68 39.7
HanXRQChr10g0319671 Helianthus annuus HOM05D002012 ORTHO05D001992 1.7e-06 60.1 68 39.7
HanXRQChr12g0354321 Helianthus annuus HOM05D002012 ORTHO05D001992 1.7e-06 60.1 68 39.7
MBI19_g11833_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 1.7e-06 60.1 96 32.3
Phvul.001G167000 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 1.7e-06 60.1 69 37.7
Solyc06g083710.3 Solanum lycopersicum HOM05D002012 ORTHO05D001992 1.7e-06 60.1 73 41.1
Sopen06g035130 Solanum pennellii HOM05D002012 ORTHO05D001992 1.7e-06 60.1 73 41.1
PGSC0003DMG400020153 Solanum tuberosum HOM05D002012 ORTHO05D001992 1.7e-06 60.1 73 41.1
COL.COLO4_20955 Corchorus olitorius HOM05D002012 ORTHO05D001992 2.2e-06 59.7 73 39.7
Nitab4.5_0002538g0090 Nicotiana tabacum HOM05D002012 ORTHO05D001992 2.2e-06 59.7 73 39.7
Nitab4.5_0003167g0100 Nicotiana tabacum HOM05D002012 ORTHO05D001992 2.2e-06 59.7 73 39.7
Aa31LG8G17310 Aethionema arabicum HOM05D002012 ORTHO05D001992 2.9e-06 59.3 66 42.4
Aa31LG9G5250 Aethionema arabicum HOM05D002012 ORTHO05D001992 2.9e-06 59.3 95 30.5
CsaV3_6G007290 Cucumis sativus L. HOM05D002012 ORTHO05D001992 2.9e-06 59.3 90 36.7
Glyma.09G068800 Glycine max HOM05D002012 ORTHO05D001992 2.9e-06 59.3 66 39.4
HanXRQChr03g0082891 Helianthus annuus HOM05D002012 ORTHO05D001992 2.9e-06 59.3 73 37.0
Hund26019 Selenicereus undatus HOM05D002012 ORTHO05D001992 2.9e-06 59.3 68 39.7
TAR365G1010 Trochodendron aralioides HOM05D002012 ORTHO05D001992 2.9e-06 59.3 73 37.0
MSTRG.19467 Avicennia marina HOM05D002012 ORTHO05D001992 3.8e-06 58.9 95 32.6
Gohir.A11G134100 Gossypium hirsutum HOM05D002012 ORTHO05D001992 3.8e-06 58.9 66 39.4
Gohir.D11G140200 Gossypium hirsutum HOM05D002012 ORTHO05D001992 3.8e-06 58.9 66 39.4
Gorai.007G150400 Gossypium raimondii HOM05D002012 ORTHO05D001992 3.8e-06 58.9 66 39.4
Lj7C686G2 Lonicera japonica HOM05D002012 ORTHO05D001992 3.8e-06 58.9 72 40.3
Lalb_Chr07g0181121 Lupinus albus HOM05D002012 ORTHO05D001992 3.8e-06 58.9 95 32.6
Os03g0145500 Oryza sativa ssp. japonica HOM05D002012 ORTHO05D001992 3.8e-06 58.9 95 32.6
Rhsim13G0040500 Rhododendron simsii HOM05D002012 ORTHO05D001992 3.8e-06 58.9 66 39.4
Sc08g0008860 Simmondsia chinensis HOM05D002012 ORTHO05D001992 3.8e-06 58.9 95 32.6
Sc08g0009350 Simmondsia chinensis HOM05D002012 ORTHO05D001992 3.8e-06 58.9 95 32.6
Thecc.01G248500 Theobroma cacao HOM05D002012 ORTHO05D001992 3.8e-06 58.9 73 39.7
ECA236G1251 Erigeron canadensis HOM05D002012 ORTHO05D001992 5.0e-06 58.5 66 42.4
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 5.0e-06 58.5 178 27.0
Lsat_1_v5_gn_5_141180 Lactuca sativa HOM05D002012 ORTHO05D001992 5.0e-06 58.5 68 38.2
Manes.12G041101 Manihot esculenta HOM05D002012 ORTHO05D001992 5.0e-06 58.5 73 38.4
QL09p042353 Quercus lobata HOM05D002012 ORTHO05D001992 5.0e-06 58.5 66 40.9
RcHm_v2.0_Chr6g0286081 Rosa chinensis HOM05D002012 ORTHO05D001992 5.0e-06 58.5 73 37.0
Sp7g06790 Schrenkiella parvula HOM05D002012 ORTHO05D001992 5.0e-06 58.5 66 37.9
C07p00810 Brassica napus HOM05D002012 ORTHO05D001992 6.5e-06 58.2 68 41.2
Haze_25988 Corylus avellana HOM05D002012 ORTHO05D001992 6.5e-06 58.2 95 32.6
Haze_25996 Corylus avellana HOM05D002012 ORTHO05D001992 6.5e-06 58.2 95 32.6
FvH4_2g20280 Fragaria vesca HOM05D002012 ORTHO05D001992 6.5e-06 58.2 73 38.4
FAN24G3044 Fragaria x ananassa HOM05D002012 ORTHO05D001992 6.5e-06 58.2 73 38.4
Phvul.003G131700 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 6.5e-06 58.2 95 32.6
Sed0023546 Sechium edule HOM05D002012 ORTHO05D001992 6.5e-06 58.2 87 35.6
TAR624G1209 Trochodendron aralioides HOM05D002012 ORTHO05D001992 6.5e-06 58.2 95 32.6
VMungo1215G3349 Vigna mungo HOM05D002012 ORTHO05D001992 6.5e-06 58.2 95 32.6
BcaC06g36715 Brassica carinata HOM05D002012 ORTHO05D001992 8.4e-06 57.8 68 41.2
A07p00390 Brassica napus HOM05D002012 ORTHO05D001992 8.4e-06 57.8 68 41.2
BolC7t40520H Brassica oleracea HOM05D002012 ORTHO05D001992 8.4e-06 57.8 68 41.2
BraA07t27831Z Brassica rapa HOM05D002012 ORTHO05D001992 8.4e-06 57.8 68 41.2
Cc06_g12050 Coffea canephora HOM05D002012 ORTHO05D001992 8.4e-06 57.8 95 31.6
Duzib138G0128 Durio zibethinus HOM05D002012 ORTHO05D001992 8.4e-06 57.8 73 38.4
ECA248G2013 Erigeron canadensis HOM05D002012 ORTHO05D001992 8.4e-06 57.8 66 39.4
Glyma.17G050100 Glycine max HOM05D002012 ORTHO05D001992 8.4e-06 57.8 95 31.6
Lsat_1_v5_gn_8_86401 Lactuca sativa HOM05D002012 ORTHO05D001992 8.4e-06 57.8 66 42.4
Medtr7g099030 Medicago truncatula HOM05D002012 ORTHO05D001992 8.4e-06 57.8 73 37.0
Prupe.8G213500 Prunus persica HOM05D002012 ORTHO05D001992 8.4e-06 57.8 73 37.0


User provided reference genes

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