Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 2.9e-105 385.2 189 100.0
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.9e-59 233.0 187 58.8
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 1.2e-58 230.3 187 58.3
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.2e-58 230.3 187 58.3
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.2e-58 230.3 187 58.3
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 1.6e-58 229.9 189 56.6
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.1e-58 229.6 187 57.8
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 2.1e-58 229.6 189 56.1
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 2.7e-58 229.2 187 56.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 2.7e-58 229.2 189 56.1
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.7e-58 229.2 189 57.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 3.5e-58 228.8 187 57.2
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 3.5e-58 228.8 189 56.6
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 3.5e-58 228.8 189 56.1
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 3.5e-58 228.8 189 56.6
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 57.1
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 56.6
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 57.1
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 57.1
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 56.6
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 56.1
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 56.1
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 56.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 56.6
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 4.6e-58 228.4 189 57.1
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 6.0e-58 228.0 189 56.6
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 6.0e-58 228.0 189 56.6
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 6.0e-58 228.0 189 56.1
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.0e-58 228.0 189 56.1
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 6.0e-58 228.0 189 56.1
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 6.0e-58 228.0 187 56.7
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 6.0e-58 228.0 187 57.8
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 6.0e-58 228.0 189 56.1
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 7.8e-58 227.6 189 56.1
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 7.8e-58 227.6 189 56.1
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 7.8e-58 227.6 187 56.7
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 7.8e-58 227.6 189 56.6
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 7.8e-58 227.6 188 56.9
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 7.8e-58 227.6 188 56.4
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 7.8e-58 227.6 188 56.4
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 7.8e-58 227.6 189 56.1
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.0e-57 227.3 189 57.1
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 1.0e-57 227.3 189 56.1
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.0e-57 227.3 187 56.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-57 227.3 189 55.6
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-57 227.3 189 55.6
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.3e-57 226.9 187 56.7
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.3e-57 226.9 187 56.7
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.3e-57 226.9 189 57.1
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.3e-57 226.9 189 57.1
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.3e-57 226.9 189 57.1
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.3e-57 226.9 189 55.6
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 1.7e-57 226.5 189 56.6
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 1.7e-57 226.5 189 56.6
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 1.7e-57 226.5 189 56.6
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.7e-57 226.5 189 55.6
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 1.7e-57 226.5 187 56.1
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.7e-57 226.5 187 56.7
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.7e-57 226.5 189 56.1
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 1.7e-57 226.5 187 56.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 1.7e-57 226.5 187 56.1
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 1.7e-57 226.5 189 56.6
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.3e-57 226.1 189 55.0
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 2.3e-57 226.1 187 55.6
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.3e-57 226.1 187 56.7
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.3e-57 226.1 187 57.2
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.0e-57 225.7 189 56.6
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 3.0e-57 225.7 189 55.6
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 3.0e-57 225.7 187 57.2
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.7
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.1
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.1
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.1
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.1
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.1
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.1
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.1
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 3.9e-57 225.3 190 56.3
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 3.9e-57 225.3 189 55.6
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 3.9e-57 225.3 187 56.1
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 3.9e-57 225.3 189 55.0
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 5.1e-57 224.9 187 57.2
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 5.1e-57 224.9 189 56.1
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 5.1e-57 224.9 187 56.1
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 5.1e-57 224.9 189 55.6
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 5.1e-57 224.9 187 56.1
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 5.1e-57 224.9 187 56.1
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 5.1e-57 224.9 187 56.1
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 5.1e-57 224.9 189 55.6
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 5.1e-57 224.9 187 57.8
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 6.6e-57 224.6 189 55.6
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 6.6e-57 224.6 189 55.6
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 6.6e-57 224.6 189 55.6
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 6.6e-57 224.6 189 55.0
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 8.6e-57 224.2 187 55.6
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 8.6e-57 224.2 189 55.0
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 8.6e-57 224.2 187 56.1
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 8.6e-57 224.2 187 56.1
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 8.6e-57 224.2 189 54.5
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.1e-56 223.8 187 56.1
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.5e-56 223.4 185 56.8
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.5e-56 223.4 187 56.1
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.5e-56 223.4 187 56.7
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.5e-56 223.4 189 55.6
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 1.9e-56 223.0 188 55.9
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 1.9e-56 223.0 189 54.0
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.9e-56 223.0 190 55.8
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.9e-56 223.0 187 56.7
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.5e-56 222.6 187 55.6
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.5e-56 222.6 187 55.6
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.5e-56 222.6 189 54.0
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 2.5e-56 222.6 187 56.1
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 2.5e-56 222.6 187 56.1
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.3e-56 222.2 187 56.1
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.3e-56 222.2 189 54.5
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.3e-56 222.2 189 54.5
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.3e-56 222.2 187 55.6
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 3.3e-56 222.2 187 55.1
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 3.3e-56 222.2 187 55.6
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 4.3e-56 221.9 187 55.1
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.3e-56 221.9 187 55.6
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.3e-56 221.9 187 55.6
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 5.6e-56 221.5 189 55.6
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 5.6e-56 221.5 187 56.1
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 5.6e-56 221.5 187 55.6
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 7.3e-56 221.1 187 55.1
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 9.5e-56 220.7 189 54.5
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.2e-55 220.3 189 55.6
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.6e-55 219.9 188 54.8
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.6e-55 219.9 201 53.7
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 3.6e-55 218.8 197 52.3
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 4.7e-55 218.4 187 55.6
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 4.7e-55 218.4 187 55.1
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 6.2e-55 218.0 189 55.6
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 8.1e-55 217.6 187 54.0
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.4e-54 216.9 207 51.2
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 4.4e-53 211.8 196 52.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 5.8e-53 211.5 187 53.5
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 3.5e-50 202.2 187 51.3
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.5e-48 196.1 188 52.1
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 3.3e-48 195.7 253 41.5
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.4e-46 190.3 194 48.5
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.7e-44 183.3 187 49.2
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.9e-44 182.6 164 51.8
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 2.5e-40 169.5 157 50.3
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.8e-38 163.3 186 47.3
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 2.6e-37 159.5 144 51.4
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 7.6e-37 157.9 140 52.1
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 2.2e-36 156.4 140 52.1
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 8.4e-36 154.5 127 54.3
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.9e-35 153.3 142 50.7
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-34 150.2 190 45.3
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.5e-32 142.9 136 49.3
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 8.1e-31 137.9 170 45.3
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.8e-30 136.7 140 46.4
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.5e-29 133.7 116 49.1
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.1e-27 127.5 158 42.4
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 4.6e-26 122.1 161 43.5
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.4e-24 114.8 90 56.7
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.1e-22 110.9 90 55.6
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.5e-21 107.1 90 55.6
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.6e-21 104.8 91 51.6
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.7e-20 103.6 103 46.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.9e-20 102.8 91 50.5
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.9e-20 102.1 91 50.5
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.9e-20 102.1 91 50.5
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 4.9e-20 102.1 91 50.5
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.9e-19 100.1 91 50.5
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 4.2e-19 99.0 99 46.5
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 9.3e-19 97.8 91 50.5
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 7.4e-16 88.2 100 45.0
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.2e-15 85.1 66 54.5
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 3.4e-13 79.3 69 46.4
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 7.6e-13 78.2 75 54.7
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 6.1e-10 68.6 44 68.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-08 63.5 157 30.6
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.9e-08 63.5 46 60.9
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.7e-08 62.0 66 40.9
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.7e-08 62.0 66 40.9
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.7e-08 62.0 66 40.9
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.7e-08 62.0 66 40.9
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.7e-08 62.0 66 40.9
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.7e-08 62.0 66 40.9
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 1.1e-06 57.8 34 70.6


User provided reference genes

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