Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 0.0e+00 1459.9 1210 100.0
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 0.0e+00 1075.1 851 100.0
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.7e-49 202.6 854 30.1
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.8e-46 192.6 1144 34.2
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.8e-46 192.6 1142 29.8
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 5.2e-46 191.0 966 30.6
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 8.5e-41 173.7 1124 25.4
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 2.5e-40 172.2 1054 29.3
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.2e-39 169.9 995 26.8
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.6e-39 169.5 992 25.7
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 3.6e-39 168.3 990 26.6
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.8e-38 166.0 998 25.4
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 2.3e-38 165.6 973 26.4
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 3.0e-38 165.2 992 25.3
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.0e-38 164.9 1008 25.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 2.0e-37 162.5 1231 24.4
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.6e-37 162.2 1216 23.8
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 4.4e-37 161.4 967 26.1
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 5.7e-37 161.0 986 24.7
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 5.7e-37 161.0 996 23.9
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.3e-36 159.8 970 26.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.7e-36 159.5 1150 24.3
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 2.2e-36 159.1 992 25.0
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 2.8e-36 158.7 1154 25.4
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.9e-36 157.9 975 25.5
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 8.3e-36 157.1 969 24.1
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.4e-35 156.4 966 24.8
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.8e-35 156.0 1129 23.8
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.8e-35 156.0 986 24.9
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.4e-35 155.6 975 25.5
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 5.4e-35 154.5 973 25.4
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 5.4e-35 154.5 853 25.4
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 7.0e-35 154.1 991 24.1
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.6e-34 152.9 1005 24.8
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.6e-34 152.9 989 24.2
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.6e-34 152.9 992 26.3
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 2.0e-34 152.5 1160 24.6
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 2.7e-34 152.1 969 25.5
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 5.9e-34 151.0 968 26.2
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 7.8e-34 150.6 1176 28.8
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.0e-33 150.2 1157 24.4
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 1.0e-33 150.2 989 23.9
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.7e-33 149.4 944 24.7
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.3e-33 149.1 986 23.9
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.9e-33 148.7 971 25.8
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.9e-33 148.7 949 23.9
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 3.8e-33 148.3 849 25.3
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 3.8e-33 148.3 957 25.0
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 8.6e-33 147.1 959 24.7
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.5e-32 146.4 154 48.1
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.9e-32 146.0 951 25.2
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.9e-32 146.0 958 24.7
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 2.5e-32 145.6 1190 24.4
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 2.5e-32 145.6 852 25.1
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 3.3e-32 145.2 976 23.6
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.3e-32 145.2 1001 24.8
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 5.6e-32 144.4 969 24.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 9.5e-32 143.7 1186 24.3
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 2.1e-31 142.5 1001 25.8
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.1e-31 142.5 972 24.8
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 2.1e-31 142.5 954 26.1
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.1e-31 142.5 1191 24.5
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 2.8e-31 142.1 953 24.3
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 4.7e-31 141.4 882 25.6
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 8.0e-31 140.6 1186 23.6
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.0e-30 140.2 971 24.6
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 2.3e-30 139.0 981 26.4
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 3.0e-30 138.7 979 24.0
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.0e-30 138.7 958 25.6
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 4.0e-30 138.3 155 46.5
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 5.2e-30 137.9 1152 25.0
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 8.9e-30 137.1 1214 24.1
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 8.9e-30 137.1 935 25.2
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 1.2e-29 136.7 1142 28.5
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.5e-29 136.3 988 24.1
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.4e-29 135.2 1215 24.3
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.4e-29 135.2 1007 25.4
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.4e-29 135.2 959 23.7
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 5.7e-29 134.4 186 39.2
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 5.7e-29 134.4 1150 21.6
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 7.5e-29 134.0 931 24.6
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.3e-28 133.3 192 40.6
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.2e-28 132.5 153 43.8
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.9e-28 132.1 995 23.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 3.7e-28 131.7 409 31.3
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 4.9e-28 131.3 153 43.8
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.9e-28 131.3 1214 25.9
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 8.3e-28 130.6 998 23.5
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 8.3e-28 130.6 954 24.3
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.3e-28 130.6 783 25.4
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.1e-27 130.2 155 41.3
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.1e-27 130.2 999 24.6
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.1e-27 130.2 1236 22.9
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.4e-27 129.8 1186 22.9
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.4e-27 129.8 967 23.2
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-27 129.4 155 43.2
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.8e-27 129.4 952 23.8
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.8e-27 129.4 1214 25.9
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.4e-27 129.0 436 32.3
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 2.4e-27 129.0 968 24.7
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 3.2e-27 128.6 155 42.6
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 3.2e-27 128.6 155 42.6
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 3.2e-27 128.6 155 42.6
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 4.1e-27 128.3 1015 23.5
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 4.1e-27 128.3 1193 24.5
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.6e-26 126.3 966 23.4
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.6e-26 126.3 968 24.2
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.7e-26 125.6 954 24.0
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 3.5e-26 125.2 155 41.3
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 7.8e-26 124.0 1196 24.3
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.0e-25 123.6 155 40.0
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.0e-25 123.6 972 22.2
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-25 123.2 191 38.2
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-25 122.9 968 23.6
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.3e-25 122.5 1185 23.3
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 3.0e-25 122.1 156 44.2
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 8.6e-25 120.6 428 31.5
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.1e-24 120.2 401 32.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.9e-24 119.4 884 24.5
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 3.3e-24 118.6 397 34.0
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 4.3e-24 118.2 155 43.9
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 9.5e-24 117.1 400 31.8
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-23 116.3 140 45.7
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 2.1e-23 115.9 887 22.7
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 3.6e-23 115.2 732 23.8
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 4.7e-23 114.8 979 24.2
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 4.7e-23 114.8 1186 23.8
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-22 112.8 972 22.4
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 2.3e-22 112.5 1000 23.9
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 8.9e-22 110.5 133 44.4
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.2e-21 110.2 968 21.9
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.2e-21 110.2 965 25.0
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 2.6e-21 109.0 967 22.2
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 2.6e-21 109.0 979 25.1
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 2.6e-21 109.0 1167 23.5
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 3.4e-21 108.6 434 27.9
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 5.8e-21 107.8 152 40.8
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 7.5e-21 107.5 945 23.5
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.4e-19 103.2 974 24.3
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.4e-19 102.4 149 40.9
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 3.9e-17 95.1 1174 25.8
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 5.0e-17 94.7 848 21.6
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.9e-16 92.8 400 32.2
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 1.6e-15 89.7 152 32.9
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 3.1e-14 85.5 95 48.4
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.4e-13 81.6 234 33.3
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 9.8e-13 80.5 234 33.3
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-10 73.6 190 32.6
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.7e-09 69.7 128 44.5
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.0e-09 68.9 192 37.5
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 3.9e-09 68.6 185 34.1
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 3.9e-09 68.6 185 34.1
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 8.6e-09 67.4 190 30.0
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 8.6e-09 67.4 190 30.0
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-08 66.6 184 33.7
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.9e-08 66.2 194 30.4
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-08 65.9 190 30.0
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-08 65.9 123 38.2
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 4.0e-06 58.5 128 31.2
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.0e-06 58.5 128 31.2


User provided reference genes

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