Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.6e-203 712.6 381 100.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.1e-40 169.5 233 46.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 7.9e-17 92.4 192 32.3
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.9e-17 92.4 242 31.0
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.5e-15 88.2 209 28.2
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 7.4e-15 85.9 210 28.6
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.3e-14 85.1 185 30.8
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.3e-14 85.1 210 28.1
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 2.1e-14 84.3 191 29.8
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 2.1e-14 84.3 208 28.4
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.1e-14 84.3 209 28.7
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.8e-14 84.0 203 29.1
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 3.7e-14 83.6 211 27.5
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.7e-14 83.6 226 29.6
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 4.8e-14 83.2 185 30.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 6.2e-14 82.8 202 28.2
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 8.2e-14 82.4 200 29.0
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 8.2e-14 82.4 212 28.8
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.1e-13 82.0 191 29.3
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.1e-13 82.0 203 29.1
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.1e-13 82.0 209 27.8
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.4e-13 81.6 185 28.6
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 1.4e-13 81.6 178 34.8
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.4e-13 81.6 184 29.9
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.8e-13 81.3 184 29.3
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.8e-13 81.3 191 28.3
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.8e-13 81.3 191 29.8
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.8e-13 81.3 204 28.9
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 2.4e-13 80.9 183 28.4
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.4e-13 80.9 191 28.8
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.4e-13 80.9 211 28.0
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 3.1e-13 80.5 202 27.2
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.1e-13 80.5 183 31.1
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 4.1e-13 80.1 201 27.4
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 4.1e-13 80.1 191 28.3
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.1e-13 80.1 192 29.7
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 5.3e-13 79.7 201 28.4
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.3e-13 79.7 221 28.5
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 5.3e-13 79.7 191 28.3
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 5.3e-13 79.7 203 29.1
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 5.3e-13 79.7 203 27.1
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 5.3e-13 79.7 191 27.7
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 6.9e-13 79.3 184 28.8
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 6.9e-13 79.3 204 28.4
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 6.9e-13 79.3 203 29.6
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 6.9e-13 79.3 191 27.7
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 6.9e-13 79.3 198 27.8
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 9.0e-13 79.0 191 27.2
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 9.0e-13 79.0 184 27.2
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 9.0e-13 79.0 209 26.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 9.0e-13 79.0 201 29.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.2e-12 78.6 191 26.7
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-12 78.6 191 26.7
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.5e-12 78.2 191 26.7
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.5e-12 78.2 191 27.2
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.5e-12 78.2 191 27.2
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.5e-12 78.2 203 27.6
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 2.0e-12 77.8 191 27.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.0e-12 77.8 223 26.5
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.6e-12 77.4 191 27.2
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.6e-12 77.4 203 27.6
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 3.4e-12 77.0 191 26.7
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 3.4e-12 77.0 191 26.7
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 3.4e-12 77.0 209 26.8
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 3.4e-12 77.0 192 26.6
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 4.5e-12 76.6 191 28.3
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 4.5e-12 76.6 202 26.7
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 4.5e-12 76.6 225 26.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 4.5e-12 76.6 184 28.3
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 4.5e-12 76.6 184 29.9
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 4.5e-12 76.6 256 27.7
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 5.8e-12 76.3 191 26.7
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 5.8e-12 76.3 191 26.7
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 5.8e-12 76.3 192 27.1
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 5.8e-12 76.3 219 26.9
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 5.8e-12 76.3 191 27.2
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 7.6e-12 75.9 191 27.2
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.0e-11 75.5 202 26.7
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.0e-11 75.5 202 27.2
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.0e-11 75.5 199 28.1
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.3e-11 75.1 210 27.1
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 1.3e-11 75.1 191 27.2
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.3e-11 75.1 191 26.7
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.3e-11 75.1 221 29.4
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.7e-11 74.7 191 26.7
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 2.2e-11 74.3 197 27.4
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.9e-11 73.9 206 26.2
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.9e-11 73.9 215 26.0
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 2.9e-11 73.9 218 25.7
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.8e-11 73.6 213 27.7
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 3.8e-11 73.6 188 27.1
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 5.0e-11 73.2 191 26.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 5.0e-11 73.2 192 28.1
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 6.5e-11 72.8 184 27.2
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 6.5e-11 72.8 216 27.3
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 6.5e-11 72.8 184 25.5
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 6.5e-11 72.8 282 27.3
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 8.4e-11 72.4 184 27.2
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.4e-10 71.6 184 26.6
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.4e-10 71.6 217 26.3
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.4e-10 71.6 204 25.0
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.9e-10 71.2 192 27.1
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.9e-10 71.2 202 25.2
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 2.5e-10 70.9 218 25.7
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 4.2e-10 70.1 212 25.0
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.2e-10 70.1 212 25.0
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 4.2e-10 70.1 191 28.3
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 9.3e-10 68.9 162 27.2
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.7e-09 67.4 154 29.9
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 6.1e-09 66.2 142 26.8
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 6.1e-09 66.2 142 26.8
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.0e-08 65.5 196 32.1
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.3e-08 65.1 206 24.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.8e-08 64.7 201 24.4
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.3e-08 64.3 132 29.5
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 3.0e-08 63.9 164 26.2
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.0e-08 63.9 213 23.5
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 3.9e-08 63.5 139 27.3
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 5.1e-08 63.2 164 23.8
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 5.1e-08 63.2 151 29.1
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 6.7e-08 62.8 155 28.4
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.9e-07 61.2 132 26.5
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 3.3e-07 60.5 102 35.3
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.6e-06 58.2 124 29.8
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.2e-06 55.8 107 31.8
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 8.2e-06 55.8 103 35.0


User provided reference genes

Program Settings