Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 0.0e+00 2122.1 1169 100.0
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 3.1e-64 251.5 1126 25.2
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.4e-56 226.1 1101 23.7
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 4.4e-50 204.5 1151 23.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 8.2e-49 200.3 1197 23.6
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 4.2e-45 188.0 1128 22.2
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 4.7e-44 184.5 1122 21.8
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 8.0e-44 183.7 1150 21.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 1.0e-43 183.3 1167 21.1
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.8e-43 182.6 1142 21.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.0e-43 181.8 1080 23.1
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 5.2e-43 181.0 1149 21.9
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 8.8e-43 180.3 1148 21.2
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 4.4e-42 177.9 1164 20.9
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 5.7e-42 177.6 1107 22.0
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 1.7e-41 176.0 1143 21.4
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 4.8e-41 174.5 1122 21.7
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 8.3e-41 173.7 1120 20.6
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 8.3e-41 173.7 1162 20.9
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 1.1e-40 173.3 1151 21.6
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 2.4e-40 172.2 1143 20.8
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 5.4e-40 171.0 1134 21.0
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 7.0e-40 170.6 1147 21.4
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 7.0e-40 170.6 1158 22.6
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 2.0e-39 169.1 1143 21.7
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 4.5e-39 167.9 1148 21.9
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 4.5e-39 167.9 1144 21.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 4.5e-39 167.9 1145 21.1
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 4.5e-39 167.9 1136 21.5
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.9e-39 167.5 1141 21.6
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 7.7e-39 167.2 1142 20.8
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 7.7e-39 167.2 1156 21.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 7.7e-39 167.2 1117 20.9
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 1.0e-38 166.8 1166 20.2
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 3.8e-38 164.9 1141 21.6
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 5.0e-38 164.5 1158 20.8
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.5e-38 164.1 1136 21.2
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 8.5e-38 163.7 1164 20.9
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 1.1e-37 163.3 1141 20.7
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 1.5e-37 162.9 1155 21.0
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 1.5e-37 162.9 1141 21.9
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.9e-37 162.5 1149 21.5
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 3.2e-37 161.8 1066 21.7
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 5.5e-37 161.0 1051 21.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 7.2e-37 160.6 1109 19.8
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 2.1e-36 159.1 1130 20.5
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 4.7e-36 157.9 1149 21.4
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 4.7e-36 157.9 1126 20.1
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 8.0e-36 157.1 1149 20.5
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 1.0e-35 156.8 1151 19.9
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.0e-35 156.8 1123 20.9
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 1.4e-35 156.4 1144 20.0
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 1.4e-35 156.4 1146 19.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 1.8e-35 156.0 1131 21.1
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.3e-35 155.6 1146 20.0
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 2.3e-35 155.6 1146 20.1
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 4.0e-35 154.8 1128 20.7
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 4.0e-35 154.8 1130 19.8
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 6.8e-35 154.1 1143 21.2
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.2e-34 153.3 1155 20.3
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.6e-34 152.1 1139 20.4
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 4.4e-34 151.4 1168 20.4
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 9.8e-34 150.2 1131 21.4
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 1.3e-33 149.8 1175 20.8
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.3e-33 149.8 1159 21.2
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 1.4e-32 146.4 1132 20.5
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 1.4e-32 146.4 1104 21.8
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.4e-32 146.4 1089 21.9
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 2.4e-32 145.6 1160 20.3
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 5.4e-32 144.4 303 29.0
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 7.0e-32 144.1 1131 20.2
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 1.2e-31 143.3 1155 20.1
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 4.5e-31 141.4 1149 19.9
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 5.9e-31 141.0 1141 19.3
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 7.7e-31 140.6 1105 22.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 1.3e-30 139.8 1153 20.6
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 2.9e-30 138.7 500 24.4
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 2.9e-30 138.7 1132 20.1
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 3.8e-30 138.3 1102 22.4
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 1.9e-29 136.0 1166 19.6
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 3.3e-29 135.2 1155 20.6
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 9.5e-29 133.7 1157 20.1
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.2e-28 133.3 1106 21.9
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.1e-28 132.5 1137 20.3
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 6.1e-28 131.0 1101 20.6
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.0e-27 130.2 1085 20.9
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 1.4e-27 129.8 1112 22.3
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 1.4e-27 129.8 1126 20.2
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.4e-27 129.8 227 32.2
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 2.3e-27 129.0 1092 21.7
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 8.9e-27 127.1 291 27.8
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.2e-26 126.7 292 27.7
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 2.0e-26 125.9 340 26.5
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 2.0e-26 125.9 293 27.6
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 2.6e-26 125.6 1105 21.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 2.6e-26 125.6 1124 20.5
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.6e-26 125.6 590 23.4
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 1.3e-25 123.2 1096 21.2
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 2.2e-25 122.5 1104 21.1
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 3.7e-25 121.7 1124 21.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.4e-24 119.8 378 23.5
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 3.2e-24 118.6 310 26.8
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 4.1e-24 118.2 1091 20.3
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 1.6e-23 116.3 1130 21.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.0e-23 115.9 308 26.0
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.7e-23 115.5 308 26.0
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.5e-23 115.2 1144 21.2
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 5.9e-23 114.4 1102 21.3
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.5e-21 109.0 296 26.4
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.1e-20 105.9 361 24.4
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.1e-19 102.1 320 25.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.1e-19 102.1 1097 21.3
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 5.2e-19 101.3 237 29.1
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 5.2e-19 101.3 281 24.6
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.6e-18 99.0 763 21.5
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.4e-18 98.6 254 26.0
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.3e-17 96.7 243 26.3
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 2.9e-17 95.5 236 28.4
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.1e-16 93.6 238 27.3
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 9.2e-16 90.5 223 27.4
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 2.7e-15 89.0 243 26.7
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 4.6e-15 88.2 1116 20.3
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 4.6e-15 88.2 234 27.4
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.3e-14 86.7 154 35.1
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 8.6e-14 84.0 281 24.2
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.5e-13 83.2 346 22.3
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.9e-13 82.8 247 25.9
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 5.6e-13 81.3 196 27.6
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.1e-11 75.5 144 34.0
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.2e-10 73.6 142 32.4
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.5e-10 73.2 140 30.7
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.0e-10 72.8 176 28.4
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.2e-09 69.3 117 35.9
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 6.4e-09 67.8 116 37.1
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 6.4e-09 67.8 129 34.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.4e-08 66.6 262 26.3
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.9e-08 66.2 200 25.5
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 3.2e-08 65.5 225 26.2
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.4e-08 64.7 142 31.7
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 7.1e-08 64.3 118 34.7
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 2.1e-07 62.8 131 27.5
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.8e-07 60.8 363 23.4
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 1.0e-06 60.5 273 24.9


User provided reference genes

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