Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 1.9e-142 509.2 272 100.0
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 1.3e-69 267.3 244 61.1
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 6.3e-69 265.0 250 58.8
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 1.4e-68 263.8 244 59.8
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 1.4e-68 263.8 244 60.2
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 1.4e-68 263.8 244 60.2
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 9.2e-68 261.2 244 59.0
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 1.2e-67 260.8 244 59.8
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 1.2e-67 260.8 244 60.7
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 1.6e-67 260.4 247 59.1
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 2.7e-67 259.6 251 57.0
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 2.7e-67 259.6 250 59.2
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 4.5e-67 258.8 250 58.4
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 5.9e-67 258.5 244 58.6
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 5.9e-67 258.5 249 57.0
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 5.9e-67 258.5 244 59.4
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 1.3e-66 257.3 244 58.2
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 1.7e-66 256.9 252 59.1
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 2.3e-66 256.5 244 58.6
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 2.3e-66 256.5 244 59.8
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 2.9e-66 256.1 244 59.0
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 2.9e-66 256.1 247 59.1
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 2.9e-66 256.1 250 58.0
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 3.8e-66 255.8 247 59.1
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 3.8e-66 255.8 250 58.8
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 5.0e-66 255.4 247 59.1
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 5.0e-66 255.4 245 58.0
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 6.6e-66 255.0 244 57.8
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 6.6e-66 255.0 244 57.8
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 6.6e-66 255.0 247 58.7
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 8.6e-66 254.6 250 58.8
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 1.1e-65 254.2 244 59.0
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 1.1e-65 254.2 247 57.9
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 1.9e-65 253.4 244 58.6
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 1.9e-65 253.4 247 58.7
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 2.5e-65 253.1 250 57.6
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 2.5e-65 253.1 244 59.0
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 2.5e-65 253.1 244 59.4
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 3.3e-65 252.7 244 57.8
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 3.3e-65 252.7 247 58.3
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 3.3e-65 252.7 250 57.6
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 3.3e-65 252.7 244 57.0
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 4.3e-65 252.3 244 57.4
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 5.6e-65 251.9 244 59.8
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 5.6e-65 251.9 249 59.0
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 7.3e-65 251.5 244 57.8
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 7.3e-65 251.5 244 56.1
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 7.3e-65 251.5 251 57.8
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 9.5e-65 251.1 254 54.7
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 1.2e-64 250.8 250 56.4
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 2.8e-64 249.6 244 58.2
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 4.7e-64 248.8 252 56.0
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 4.7e-64 248.8 244 57.8
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 1.4e-63 247.3 247 58.3
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.4e-63 247.3 247 57.5
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 1.4e-63 247.3 249 57.4
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 1.8e-63 246.9 244 57.8
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 2.3e-63 246.5 247 56.7
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 2.3e-63 246.5 246 57.3
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 2.3e-63 246.5 244 56.6
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 4.0e-63 245.7 250 57.2
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 6.8e-63 245.0 244 58.2
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 8.9e-63 244.6 244 57.8
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 1.2e-62 244.2 244 57.4
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 2.6e-62 243.0 244 57.4
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 4.4e-62 242.3 249 55.4
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 4.4e-62 242.3 244 57.4
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 5.7e-62 241.9 244 57.0
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 1.7e-61 240.4 245 57.6
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 3.7e-61 239.2 253 56.1
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 1.1e-60 237.7 244 54.1
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 1.1e-60 237.7 244 56.1
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.4e-60 237.3 244 55.7
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 1.4e-60 237.3 238 57.6
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 1.8e-60 236.9 251 53.0
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.4e-60 236.5 244 55.3
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 9.2e-60 234.6 258 53.1
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 1.6e-59 233.8 244 54.5
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 1.6e-59 233.8 244 54.5
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 2.0e-59 233.4 244 54.5
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 3.5e-59 232.6 244 54.1
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 3.5e-59 232.6 245 54.7
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 3.5e-59 232.6 245 54.7
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 3.5e-59 232.6 244 55.7
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 4.6e-59 232.3 245 54.7
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 4.6e-59 232.3 245 54.7
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 7.8e-59 231.5 244 52.9
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 1.3e-58 230.7 244 52.5
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 2.3e-58 229.9 244 52.9
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 2.3e-58 229.9 251 52.2
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 2.3e-58 229.9 245 54.3
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 2.3e-58 229.9 247 53.8
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 5.0e-58 228.8 245 54.3
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 5.0e-58 228.8 205 62.9
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.5e-57 227.3 256 52.7
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 1.6e-56 223.8 226 56.6
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 6.2e-56 221.9 225 56.4
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 2.3e-55 219.9 230 56.1
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 1.5e-54 217.2 253 53.0
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 4.1e-52 209.1 206 59.2
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 3.5e-51 206.1 190 61.6
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 8.6e-50 201.4 190 61.6
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 4.3e-49 199.1 190 61.1
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 5.6e-49 198.7 309 43.7
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 7.3e-49 198.4 245 50.2
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 6.2e-48 195.3 189 60.3
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 8.1e-48 194.9 189 60.3
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 4.0e-47 192.6 246 47.2
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 5.8e-46 188.7 244 48.8
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 5.8e-46 188.7 179 56.4
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 6.4e-45 185.3 220 50.0
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 1.5e-38 164.1 181 53.6
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 3.8e-37 159.5 185 51.4
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 3.6e-32 142.9 141 58.2
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 9.3e-28 128.3 115 60.0
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 4.6e-27 125.9 115 54.8
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 2.9e-21 106.7 111 51.4
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 1.1e-17 94.7 95 54.7
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.1e-15 88.2 88 56.8
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.2e-13 80.5 85 51.8
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 3.9e-10 69.7 87 46.0


User provided reference genes

Program Settings