Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 9.2e-165 583.6 311 100.0
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 2.6e-87 326.2 310 59.4
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 1.1e-85 320.9 310 59.0
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 1.2e-84 317.4 315 56.2
AagrBONN_evm.TU.Sc2ySwM_344.5210 Anthoceros agrestis HOM05D003546 ORTHO05D005667 8.3e-81 304.7 303 57.4
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 9.1e-80 301.2 307 56.7
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.2e-79 300.8 306 56.2
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 3.5e-79 299.3 306 55.9
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 3.5e-79 299.3 308 54.9
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 7.7e-79 298.1 306 55.6
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 1.0e-78 297.7 306 55.2
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.0e-78 297.7 306 55.2
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.0e-78 297.7 306 55.2
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 2.2e-78 296.6 306 55.2
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 6.5e-78 295.0 306 54.9
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 6.5e-78 295.0 311 54.0
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 8.5e-78 294.7 307 55.0
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 8.5e-78 294.7 312 55.4
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 8.5e-78 294.7 311 54.3
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 1.1e-77 294.3 308 54.9
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 1.1e-77 294.3 306 55.6
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 1.1e-77 294.3 306 53.9
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 1.5e-77 293.9 307 54.7
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 1.5e-77 293.9 308 54.9
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 1.5e-77 293.9 308 55.2
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 1.5e-77 293.9 308 54.9
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 1.9e-77 293.5 309 54.4
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 1.9e-77 293.5 307 54.7
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 1.9e-77 293.5 311 53.7
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 2.5e-77 293.1 308 54.9
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 2.5e-77 293.1 310 54.2
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 2.5e-77 293.1 306 55.2
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 2.5e-77 293.1 308 54.5
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 2.5e-77 293.1 306 54.9
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 4.2e-77 292.4 306 54.9
SMO163G0088 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 4.2e-77 292.4 326 53.1
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 4.2e-77 292.4 306 54.6
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 7.2e-77 291.6 308 56.2
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 7.2e-77 291.6 306 55.2
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 7.2e-77 291.6 306 55.2
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 9.4e-77 291.2 309 53.7
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 1.2e-76 290.8 313 53.4
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 1.6e-76 290.4 306 54.6
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 1.6e-76 290.4 306 54.2
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 2.1e-76 290.0 306 55.2
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 2.7e-76 289.7 319 52.7
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 2.7e-76 289.7 310 55.8
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 3.6e-76 289.3 309 53.7
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 4.7e-76 288.9 306 54.6
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 4.7e-76 288.9 306 53.9
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 4.7e-76 288.9 306 54.6
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 6.1e-76 288.5 306 54.2
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 8.0e-76 288.1 306 54.2
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 8.0e-76 288.1 304 53.3
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 8.0e-76 288.1 309 53.4
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 8.0e-76 288.1 305 54.4
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 1.4e-75 287.3 308 54.2
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 1.4e-75 287.3 306 53.6
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 1.4e-75 287.3 306 53.6
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 1.8e-75 287.0 309 53.1
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 1.8e-75 287.0 306 53.6
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 1.8e-75 287.0 306 53.6
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 2.3e-75 286.6 306 53.6
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 2.3e-75 286.6 309 53.4
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 2.3e-75 286.6 306 54.6
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 3.0e-75 286.2 308 53.6
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 4.0e-75 285.8 310 53.5
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 5.2e-75 285.4 309 53.1
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 5.2e-75 285.4 306 54.6
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 5.2e-75 285.4 306 53.9
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.2e-74 284.3 303 54.5
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 2.0e-74 283.5 307 53.4
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 2.0e-74 283.5 310 54.8
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 2.6e-74 283.1 306 53.9
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 2.6e-74 283.1 312 53.8
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 3.4e-74 282.7 306 54.2
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 3.4e-74 282.7 308 52.9
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 4.4e-74 282.3 302 53.0
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 7.5e-74 281.6 309 53.1
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 7.5e-74 281.6 306 53.3
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 7.5e-74 281.6 306 53.9
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 9.8e-74 281.2 309 52.8
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 1.3e-73 280.8 322 51.2
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.3e-73 280.8 307 53.1
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 1.3e-73 280.8 309 52.8
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 1.7e-73 280.4 307 53.1
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 1.7e-73 280.4 306 53.9
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 2.2e-73 280.0 306 53.6
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 2.8e-73 279.6 309 52.4
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 3.7e-73 279.3 309 52.4
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 6.3e-73 278.5 310 53.2
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 8.3e-73 278.1 308 53.9
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 8.3e-73 278.1 305 52.8
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 1.4e-72 277.3 309 52.4
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 1.4e-72 277.3 306 52.9
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 2.4e-72 276.6 331 50.8
SMO119G0495 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 2.4e-72 276.6 314 52.5
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 7.0e-72 275.0 308 51.6
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 7.0e-72 275.0 331 50.5
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 1.6e-71 273.9 306 52.6
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 2.3e-70 270.0 307 51.5
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 2.3e-70 270.0 308 52.6
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 5.0e-70 268.9 307 53.7
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 6.6e-70 268.5 303 51.5
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 3.3e-69 266.2 332 49.4
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 6.1e-68 261.9 310 50.3
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.8e-67 260.4 271 56.5
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.2e-66 257.7 308 49.0
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 3.9e-62 242.7 260 52.7
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 2.8e-60 236.5 291 48.5
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 5.0e-54 215.7 304 45.7
MCO15G239 Micromonas commoda HOM05D003546 ORTHO05D005667 2.0e-50 203.8 326 43.6
CBR_g61469 Chara braunii HOM05D003546 ORTHO05D005667 5.8e-50 202.2 316 44.3
Phvul.005G070200 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 8.3e-49 198.4 265 46.8
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 1.5e-45 187.6 186 57.0
PRCOL_00001203 Prasinoderma coloniale HOM05D003546 ORTHO05D005667 1.9e-45 187.2 336 44.3
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 8.9e-43 178.3 310 41.9
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 8.9e-43 178.3 186 55.9
Cre12.g531150 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 1.0e-38 164.9 395 35.9
arahy.Tifrunner.gnm1.ann1.FE4UN0 Arachis hypogaea HOM05D003546 ORTHO05D005667 7.6e-34 148.7 154 54.5
AUR62019675 Chenopodium quinoa HOM05D003546 ORTHO05D005667 7.6e-34 148.7 191 49.7
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 1.1e-32 144.8 152 52.6
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 1.6e-31 141.0 308 36.0
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 3.5e-31 139.8 151 51.7
Haze_08457 Corylus avellana HOM05D003546 ORTHO05D005667 4.6e-31 139.4 154 51.3
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 6.0e-31 139.0 153 51.6
arahy.Tifrunner.gnm1.ann1.JM4QTS Arachis hypogaea HOM05D003546 ORTHO05D005667 1.7e-30 137.5 154 51.9
Cfa023965 Carpinus fangiana HOM05D003546 ORTHO05D005667 5.8e-26 122.5 320 35.0
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 3.6e-20 103.2 110 49.1
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 3.6e-20 103.2 110 49.1
MCO13G515 Micromonas commoda HOM05D003546 ORTHO05D005667 1.2e-18 98.2 336 31.2
PRCOL_00001162 Prasinoderma coloniale HOM05D003546 ORTHO05D005667 9.3e-16 88.6 344 33.7
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 4.6e-15 86.3 110 47.3
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 4.3e-13 79.7 112 46.4
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 1.6e-12 77.8 105 46.7
Ca_28944_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 2.1e-12 77.4 201 34.8
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 1.4e-11 74.7 109 44.0
SEGI_15011 Sequoiadendron giganteum HOM05D003546 ORTHO05D005667 4.0e-11 73.2 57 59.6
SEGI_24352 Sequoiadendron giganteum HOM05D003546 ORTHO05D005667 4.0e-11 73.2 57 59.6
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 2.9e-09 67.0 70 52.9
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 6.5e-09 65.9 110 40.9
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 6.5e-09 65.9 110 40.9
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 1.1e-08 65.1 110 40.0
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 1.4e-08 64.7 77 45.5
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 1.4e-08 64.7 93 43.0
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 1.0e-06 58.5 56 57.1
AT4G10260 Arabidopsis thaliana HOM05D000559 ORTHO05D000596 1.3e-06 58.2 291 27.5
PSO732G0606 Papaver somniferum HOM05D000559 ORTHO05D000596 1.8e-06 57.8 336 28.0
CDE07G0162 Ceratophyllum demersum HOM05D000559 ORTHO05D000596 2.3e-06 57.4 300 27.0
AL6G44092 Arabidopsis lyrata HOM05D000559 ORTHO05D000596 3.0e-06 57.0 291 27.1
Thhalv10029371m.g Eutrema salsugineum HOM05D000559 ORTHO05D000596 3.0e-06 57.0 295 26.4
Lj7A414T46 Lonicera japonica HOM05D000559 ORTHO05D000596 3.0e-06 57.0 293 25.3
PSO675G1112 Papaver somniferum HOM05D000559 ORTHO05D000596 3.0e-06 57.0 336 28.0
Sp6g07190 Schrenkiella parvula HOM05D000559 ORTHO05D000596 3.0e-06 57.0 291 26.5
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 3.9e-06 56.6 56 50.0
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 5.1e-06 56.2 65 49.2
MBI08_g09973_MAGBIO Magnolia biondii HOM05D000559 ORTHO05D000596 5.1e-06 56.2 289 28.4
Aa31LG9G11740 Aethionema arabicum HOM05D000559 ORTHO05D000596 6.7e-06 55.8 289 26.6
MD04G1042400 Malus domestica HOM05D000559 ORTHO05D000596 6.7e-06 55.8 295 26.4
PSO675G6422 Papaver somniferum HOM05D000559 ORTHO05D000596 6.7e-06 55.8 304 27.3
PSO732G0003 Papaver somniferum HOM05D000559 ORTHO05D000596 6.7e-06 55.8 303 27.4
PSO732G0386 Papaver somniferum HOM05D000559 ORTHO05D000596 6.7e-06 55.8 303 27.4
PSO732G0448 Papaver somniferum HOM05D000559 ORTHO05D000596 6.7e-06 55.8 303 27.4
SpUn0372_0010 Schrenkiella parvula HOM05D000559 ORTHO05D000596 6.7e-06 55.8 298 27.2
TAR362G0099 Trochodendron aralioides HOM05D000559 ORTHO05D000596 6.7e-06 55.8 298 26.8
BcaB01g02761 Brassica carinata HOM05D000559 ORTHO05D000596 8.7e-06 55.5 290 26.6
HanXRQChr11g0330431 Helianthus annuus HOM05D003546 ORTHO05D005667 8.7e-06 55.5 51 58.8


User provided reference genes

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