Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g371650 Chlamydomonas reinhardtii HOM05D005376 ORTHO05D006481 3.3e-96 355.5 254 100.0
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 1.0e-20 104.8 181 38.7
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 1.5e-19 100.9 164 43.9
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 9.6e-19 98.2 140 40.7
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 1.3e-18 97.8 185 37.8
Pp3c5_19450 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.1e-17 94.7 118 48.3
Pp3c5_19453 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.1e-17 94.7 118 48.3
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.4e-17 94.4 86 55.8
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 1.8e-17 94.0 75 62.7
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 1.8e-17 94.0 92 53.3
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 3.1e-17 93.2 118 42.4
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 4.0e-17 92.8 140 42.9
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 5.3e-17 92.4 119 42.9
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 6.9e-17 92.0 136 43.4
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 6.9e-17 92.0 119 42.0
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 9.0e-17 91.7 174 36.8
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 9.0e-17 91.7 100 51.0
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 9.0e-17 91.7 106 43.4
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 1.2e-16 91.3 122 41.0
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 1.2e-16 91.3 150 40.7
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 1.5e-16 90.9 100 47.0
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 1.5e-16 90.9 122 41.8
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 2.0e-16 90.5 72 59.7
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 2.0e-16 90.5 96 50.0
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 2.0e-16 90.5 124 44.4
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 2.6e-16 90.1 129 40.3
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 2.6e-16 90.1 155 39.4
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 2.6e-16 90.1 170 37.6
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 2.6e-16 90.1 72 59.7
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 3.4e-16 89.7 80 53.8
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 3.4e-16 89.7 156 37.8
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 3.4e-16 89.7 104 45.2
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 3.4e-16 89.7 147 38.1
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 3.4e-16 89.7 139 41.7
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 4.5e-16 89.4 123 43.1
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 4.5e-16 89.4 127 40.9
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 4.5e-16 89.4 71 62.0
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 4.5e-16 89.4 147 38.1
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 4.5e-16 89.4 109 43.1
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 5.8e-16 89.0 101 45.5
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 5.8e-16 89.0 120 40.8
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 5.8e-16 89.0 127 40.9
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 5.8e-16 89.0 127 40.9
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 5.8e-16 89.0 123 43.1
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 5.8e-16 89.0 127 40.9
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 5.8e-16 89.0 123 43.1
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 5.8e-16 89.0 77 57.1
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 5.8e-16 89.0 192 36.5
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 7.6e-16 88.6 107 45.8
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 7.6e-16 88.6 73 58.9
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 7.6e-16 88.6 146 38.4
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 7.6e-16 88.6 124 41.1
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 9.9e-16 88.2 188 34.0
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 9.9e-16 88.2 104 45.2
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 9.9e-16 88.2 149 39.6
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 1.3e-15 87.8 111 45.0
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 1.3e-15 87.8 100 48.0
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 1.3e-15 87.8 138 37.7
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 1.3e-15 87.8 139 39.6
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 1.3e-15 87.8 77 55.8
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 1.3e-15 87.8 100 48.0
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 1.3e-15 87.8 167 35.9
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.3e-15 87.8 105 44.8
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 1.7e-15 87.4 145 40.0
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 1.7e-15 87.4 150 38.7
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 1.7e-15 87.4 134 40.3
CBR_g49097 Chara braunii HOM05D005376 ORTHO05D006481 2.2e-15 87.0 108 50.9
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.2e-15 87.0 149 38.3
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 2.2e-15 87.0 155 37.4
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 2.9e-15 86.7 109 45.0
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 2.9e-15 86.7 139 39.6
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 2.9e-15 86.7 139 40.3
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 2.9e-15 86.7 71 59.2
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 3.8e-15 86.3 104 45.2
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 3.8e-15 86.3 71 59.2
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 3.8e-15 86.3 144 41.7
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 6.4e-15 85.5 70 57.1
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 6.4e-15 85.5 71 57.7
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 6.4e-15 85.5 145 40.0
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 6.4e-15 85.5 123 41.5
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 6.4e-15 85.5 86 52.3
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 6.4e-15 85.5 75 54.7
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 8.4e-15 85.1 66 60.6
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 8.4e-15 85.1 112 41.1
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 8.4e-15 85.1 168 35.1
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 8.4e-15 85.1 151 37.1
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 1.1e-14 84.7 70 58.6
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 1.1e-14 84.7 134 39.6
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 1.1e-14 84.7 97 48.5
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 1.4e-14 84.3 127 39.4
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 1.4e-14 84.3 86 48.8
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 2.4e-14 83.6 133 39.1
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 2.4e-14 83.6 146 39.0
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 2.4e-14 83.6 97 47.4
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 3.2e-14 83.2 171 32.7
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 4.2e-14 82.8 140 39.3
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 4.2e-14 82.8 173 36.4
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 5.4e-14 82.4 184 33.7
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.4e-14 82.4 184 33.7
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.4e-14 82.4 184 33.7
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 7.1e-14 82.0 108 45.4
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 9.3e-14 81.6 156 35.9
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 9.3e-14 81.6 148 41.2
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.2e-13 81.3 155 36.1
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.2e-13 81.3 155 36.1
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.1e-13 80.5 150 36.7
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 2.1e-13 80.5 152 36.2
PRCOL_00002629 Prasinoderma coloniale HOM05D005376 ORTHO05D006481 2.1e-13 80.5 92 40.2
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 2.1e-13 80.5 136 38.2
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 1.3e-12 77.8 77 49.4
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 3.9e-12 76.3 127 36.2
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 3.9e-12 76.3 170 37.1
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 5.1e-12 75.9 189 33.9
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 5.1e-12 75.9 169 33.7
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 6.7e-12 75.5 99 43.4
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 4.3e-11 72.8 191 30.9
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 2.8e-10 70.1 107 41.1
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 4.8e-10 69.3 67 52.2
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 1.4e-09 67.8 100 39.0
HPP92_028097 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.8e-09 67.4 58 53.4
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 2.4e-09 67.0 106 37.7
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 2.4e-09 67.0 135 38.5
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 3.1e-09 66.6 179 31.3
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 4.0e-09 66.2 72 47.2
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 5.3e-09 65.9 72 47.2
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 1.5e-08 64.3 181 32.0
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 2.6e-08 63.5 70 47.1
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 3.4e-08 63.2 130 36.2
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 5.8e-08 62.4 173 31.8


User provided reference genes

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