Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.2e-182 643.7 509 100.0
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 3.9e-19 100.5 498 25.1
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.9e-18 98.2 467 24.4
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 9.5e-18 95.9 498 24.9
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 9.5e-18 95.9 498 24.9
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 1.6e-17 95.1 498 24.9
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.1e-17 94.7 507 24.5
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 2.8e-17 94.4 468 24.1
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.4e-16 92.0 506 24.1
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 1.4e-16 92.0 471 24.4
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 6.8e-16 89.7 462 22.5
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 8.9e-16 89.4 451 24.6
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 8.9e-16 89.4 463 24.0
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 2.0e-15 88.2 462 24.5
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 3.4e-15 87.4 385 26.0
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 3.4e-15 87.4 465 23.7
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 4.4e-15 87.0 385 26.2
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 4.4e-15 87.0 385 26.0
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 4.4e-15 87.0 464 23.7
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.4e-15 87.0 462 24.0
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 4.4e-15 87.0 497 23.9
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 5.8e-15 86.7 462 24.5
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 5.8e-15 86.7 465 23.7
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 5.8e-15 86.7 465 23.7
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.3e-14 85.5 462 23.4
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.3e-14 85.5 501 24.2
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.7e-14 85.1 461 28.4
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.2e-14 84.7 462 22.3
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 2.2e-14 84.7 461 24.3
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 2.2e-14 84.7 462 24.0
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 2.2e-14 84.7 461 23.9
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.9e-14 84.3 463 23.3
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.9e-14 84.3 463 23.5
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 2.9e-14 84.3 465 23.4
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 6.4e-14 83.2 461 23.9
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 6.4e-14 83.2 462 23.4
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 8.3e-14 82.8 462 23.4
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 8.3e-14 82.8 463 24.0
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.1e-13 82.4 461 23.4
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 1.4e-13 82.0 473 24.1
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 1.4e-13 82.0 462 23.2
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 1.4e-13 82.0 499 24.2
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.9e-13 81.6 499 23.4
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.4e-13 81.3 461 24.1
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 2.4e-13 81.3 462 23.6
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 2.4e-13 81.3 499 23.6
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 4.1e-13 80.5 462 23.2
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.1e-13 79.7 506 24.1
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 7.1e-13 79.7 451 23.7
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.2e-12 79.0 464 23.3
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.2e-12 79.0 466 22.7
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.2e-12 79.0 466 23.2
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.6e-12 78.6 506 23.7
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.6e-12 78.6 463 23.5
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 4.6e-12 77.0 134 35.8
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 6.0e-12 76.6 462 22.7
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 6.0e-12 76.6 466 21.9
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 7.8e-12 76.3 461 22.8
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 7.8e-12 76.3 128 33.6
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 7.8e-12 76.3 134 36.6
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.0e-11 75.9 462 22.5
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 2.3e-11 74.7 485 22.9
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 2.3e-11 74.7 128 32.0
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.3e-11 74.7 462 22.7
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.0e-11 74.3 134 35.1
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.0e-11 74.3 134 35.1
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 3.0e-11 74.3 134 34.3
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 3.0e-11 74.3 134 35.8
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 3.0e-11 74.3 499 22.8
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 3.9e-11 73.9 134 34.3
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 6.6e-11 73.2 466 22.3
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 1.1e-10 72.4 451 22.8
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.1e-10 72.4 134 33.6
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.1e-10 72.4 461 22.8
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 1.1e-10 72.4 499 22.8
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.1e-10 72.4 128 31.2
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.5e-10 72.0 480 22.7
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 1.5e-10 72.0 134 34.3
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.9e-10 71.6 134 32.8
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.9e-10 71.6 134 32.8
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 2.5e-10 71.2 128 30.5
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 3.3e-10 70.9 128 31.2
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 3.3e-10 70.9 499 21.8
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 5.6e-10 70.1 128 32.8
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 5.6e-10 70.1 134 32.8
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 5.6e-10 70.1 128 47.7
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 7.3e-10 69.7 499 22.2
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 7.3e-10 69.7 461 22.1
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 9.6e-10 69.3 499 22.4
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 1.2e-09 68.9 123 35.0
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.2e-09 68.9 171 30.4
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.6e-09 68.6 171 31.0
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 2.8e-09 67.8 134 31.3
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 8.1e-09 66.2 128 28.9
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.1e-08 65.9 134 31.3
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.1e-08 65.9 136 34.6
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 4.0e-08 63.9 154 31.8
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 4.0e-08 63.9 112 32.1
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 8.9e-08 62.8 112 31.2
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.2e-07 62.4 136 30.9
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.2e-07 62.4 498 21.7
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 2.0e-07 61.6 125 30.4
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 2.6e-07 61.2 134 30.6
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 3.4e-07 60.8 128 30.5
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 5.8e-07 60.1 506 21.9
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 7.6e-07 59.7 60 50.0
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 9.9e-07 59.3 223 28.3
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 9.9e-07 59.3 128 25.8
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 2.9e-06 57.8 108 30.6
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.9e-06 57.8 216 27.8
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 4.9e-06 57.0 220 27.3
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 8.4e-06 56.2 130 32.3


User provided reference genes

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