Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 0.0e+00 1327.4 666 100.0
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 3.9e-96 356.7 709 36.2
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.7e-91 341.3 185 92.4
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 9.4e-90 335.5 167 99.4
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 3.2e-74 283.9 676 31.7
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 1.6e-73 281.6 692 32.1
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.6e-73 281.6 687 32.0
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 4.8e-70 270.0 672 31.8
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 4.8e-70 270.0 672 32.0
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 6.3e-70 269.6 675 30.7
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 1.1e-69 268.9 672 32.4
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 1.4e-69 268.5 672 31.7
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 2.4e-69 267.7 672 31.1
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 4.1e-69 266.9 672 32.3
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 4.1e-69 266.9 672 32.3
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 5.3e-69 266.5 671 32.0
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 2.0e-68 264.6 683 30.9
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 5.9e-68 263.1 674 30.4
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 1.5e-66 258.5 679 31.5
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 1.9e-66 258.1 674 30.6
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 3.2e-66 257.3 671 31.4
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 4.2e-66 256.9 681 30.1
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 4.2e-66 256.9 676 30.3
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 7.2e-66 256.1 674 30.0
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 1.2e-65 255.4 679 30.9
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 3.6e-65 253.8 685 30.2
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 6.1e-65 253.1 702 31.1
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 8.0e-65 252.7 670 30.0
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 8.0e-65 252.7 680 29.9
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 1.0e-64 252.3 674 28.9
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 1.8e-64 251.5 672 31.1
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 4.0e-64 250.4 660 29.7
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 4.0e-64 250.4 677 29.1
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 4.0e-64 250.4 681 29.8
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 5.2e-64 250.0 676 30.0
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 8.8e-64 249.2 678 29.6
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 3.3e-63 247.3 678 29.6
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 4.4e-63 246.9 674 28.0
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 1.3e-62 245.4 666 32.0
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 1.7e-62 245.0 675 30.1
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 2.8e-62 244.2 681 30.0
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 1.4e-61 241.9 674 29.1
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 1.8e-61 241.5 680 29.3
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 1.8e-61 241.5 686 29.4
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 2.4e-61 241.1 670 29.4
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 3.1e-61 240.7 680 29.0
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 4.1e-61 240.4 686 29.0
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 9.1e-61 239.2 671 28.9
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 1.6e-60 238.4 675 29.5
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 2.0e-60 238.0 649 30.4
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 2.0e-60 238.0 679 29.5
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 3.5e-60 237.3 678 29.2
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 4.5e-60 236.9 681 29.7
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 1.0e-59 235.7 681 31.3
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 1.0e-59 235.7 684 28.8
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 1.7e-59 235.0 674 28.3
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 2.2e-59 234.6 687 29.0
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 2.9e-59 234.2 669 29.3
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 1.9e-58 231.5 694 29.0
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 1.9e-58 231.5 674 28.0
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.2e-57 228.8 671 28.9
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 2.1e-57 228.0 674 29.1
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 2.7e-57 227.6 673 28.7
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 2.7e-57 227.6 713 28.5
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.0e-56 223.8 692 28.5
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 1.2e-55 222.2 685 29.6
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.5e-55 221.9 654 28.3
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 2.6e-55 221.1 683 28.1
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 4.4e-55 220.3 661 27.8
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 7.5e-55 219.5 688 28.3
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 9.8e-55 219.2 682 27.6
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.7e-54 218.4 686 29.2
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 2.8e-54 217.6 694 28.1
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 2.8e-54 217.6 682 27.6
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 6.3e-54 216.5 590 30.5
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 4.1e-53 213.8 675 27.9
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 7.0e-53 213.0 676 28.6
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 2.7e-52 211.1 664 29.2
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 3.5e-52 210.7 664 27.4
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 3.5e-52 210.7 451 34.1
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 3.5e-52 210.7 649 28.0
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 5.9e-52 209.9 655 27.6
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 7.7e-52 209.5 672 27.7
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 7.7e-52 209.5 674 27.2
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 1.7e-51 208.4 583 29.0
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 2.3e-51 208.0 634 27.9
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 9.5e-50 202.6 654 27.1
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 9.5e-50 202.6 535 29.0
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 8.0e-49 199.5 699 27.0
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 1.4e-48 198.7 575 29.2
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 3.0e-48 197.6 699 26.9
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 5.2e-48 196.8 680 26.9
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 7.0e-45 186.4 639 27.2
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 1.1e-42 179.1 469 31.3
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 3.6e-41 174.1 668 26.5
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 8.0e-41 172.9 767 25.6
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 6.4e-38 163.3 572 27.1
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 1.4e-37 162.2 520 28.5
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 6.8e-32 143.3 496 26.6
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 7.5e-31 139.8 484 26.0
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 3.0e-27 127.9 220 34.1
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 6.6e-27 126.7 220 33.6
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 5.6e-26 123.6 220 31.4
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 7.3e-26 123.2 220 32.3
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 9.5e-26 122.9 478 24.7
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 2.8e-25 121.3 220 32.7
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 4.7e-25 120.6 220 32.7
MCO16G282 Micromonas commoda HOM05D005251 ORTHO05D006680 2.0e-23 115.2 291 35.1
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 1.4e-21 109.0 222 30.6
arahy.Tifrunner.gnm1.ann1.V18GKH Arachis hypogaea HOM05D005251 ORTHO05D006680 3.6e-17 94.4 171 38.0
Sopen12g003810 Solanum pennellii HOM05D005251 ORTHO05D006680 3.6e-17 94.4 128 46.9
BcaNung02827 Brassica carinata HOM05D005251 ORTHO05D006680 1.2e-15 89.4 187 35.8
BcaNung03955 Brassica carinata HOM05D005251 ORTHO05D006680 1.2e-15 89.4 187 35.8
C09p50860 Brassica napus HOM05D005251 ORTHO05D006680 2.6e-15 88.2 187 33.7
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 2.6e-15 88.2 126 34.9
Solyc12g008890.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.7e-14 85.5 88 53.4
ATR0789G123 Amborella trichopoda HOM05D005251 ORTHO05D006680 6.4e-14 83.6 80 50.0
SGA_v2.0_scaffold21G09392 Striga asiatica HOM05D005251 ORTHO05D006680 6.4e-14 83.6 96 44.8
HPP92_009143 Vanilla planifolia HOM05D005251 ORTHO05D006680 4.2e-13 80.9 149 33.6
vmacro17242 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 9.2e-13 79.7 93 45.2
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 1.3e-11 75.9 79 44.3
Lalb_Chr12g0199801 Lupinus albus HOM05D005251 ORTHO05D006680 1.7e-11 75.5 177 32.8
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 3.9e-11 74.3 98 36.7
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 1.2e-09 69.3 220 26.4
BcaNung02829 Brassica carinata HOM05D005251 ORTHO05D019858 2.1e-09 68.6 139 35.3
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 3.1e-08 64.7 91 37.4
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 5.3e-08 63.9 182 26.4
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 1.2e-07 62.8 121 28.1
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 1.5e-07 62.4 80 42.5
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 1.5e-07 62.4 297 23.9
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 1.5e-07 62.4 230 26.1
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.4e-07 61.2 259 25.9
MD15G1207700 Malus domestica HOM05D005251 ORTHO05D006680 4.4e-07 60.8 153 34.6
PSO782G1034 Papaver somniferum HOM05D002658 ORTHO05D003000 9.9e-07 59.7 100 33.0
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.8e-06 57.8 257 26.8
PSO063G2038 Papaver somniferum HOM05D002658 ORTHO05D003000 4.9e-06 57.4 73 35.6
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 8.4e-06 56.6 144 31.9


User provided reference genes

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