Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 2.5e-44 181.8 97 100.0
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.1e-10 68.6 88 46.6
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 3.4e-09 65.1 76 47.4
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.4e-09 65.1 88 43.2
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 3.4e-09 65.1 84 46.4
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 4.5e-09 64.7 76 47.4
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 4.5e-09 64.7 90 43.3
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 5.9e-09 64.3 76 47.4
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 7.6e-09 63.9 76 47.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 7.6e-09 63.9 76 47.4
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 7.6e-09 63.9 76 47.4
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 7.6e-09 63.9 76 47.4
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 7.6e-09 63.9 76 47.4
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.0e-08 63.5 88 42.0
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.3e-08 63.2 76 47.4
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.3e-08 63.2 96 44.8
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.9e-08 62.0 76 48.7
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.8e-08 61.6 76 44.7
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.8e-08 61.6 88 40.9
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.0e-08 61.2 91 42.9
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 6.5e-08 60.8 76 47.4
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 6.5e-08 60.8 76 47.4
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.1e-07 60.1 76 46.1
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 1.1e-07 60.1 88 42.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.1e-07 60.1 76 44.7
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.1e-07 60.1 76 46.1
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-07 60.1 76 47.4
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-07 60.1 76 47.4
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.4e-07 59.7 71 50.7
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.4e-07 59.7 76 46.1
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 1.9e-07 59.3 76 46.1
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.9e-07 59.3 76 43.4
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.5e-07 58.9 76 47.4
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.5e-07 58.9 76 47.4
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 2.5e-07 58.9 76 46.1
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 2.5e-07 58.9 76 47.4
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 3.2e-07 58.5 79 45.6
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 3.2e-07 58.5 88 40.9
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.2e-07 58.5 76 46.1
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.2e-07 58.2 87 41.4
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.2e-07 58.2 76 46.1
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.2e-07 58.2 76 46.1
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.2e-07 58.2 76 46.1
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 4.2e-07 58.2 78 44.9
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 4.2e-07 58.2 78 44.9
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 5.5e-07 57.8 76 44.7
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 5.5e-07 57.8 76 46.1
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 5.5e-07 57.8 76 44.7
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 5.5e-07 57.8 76 44.7
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 5.5e-07 57.8 76 44.7
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 5.5e-07 57.8 76 47.4
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.5e-07 57.8 76 44.7
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.5e-07 57.8 79 44.3
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 7.2e-07 57.4 87 42.5
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 7.2e-07 57.4 76 44.7
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 7.2e-07 57.4 76 46.1
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 7.2e-07 57.4 76 47.4
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 7.2e-07 57.4 79 44.3
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 7.2e-07 57.4 88 42.0
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 7.2e-07 57.4 82 41.5
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 9.3e-07 57.0 86 43.0
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 9.3e-07 57.0 86 43.0
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 9.3e-07 57.0 76 44.7
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 9.3e-07 57.0 73 39.7
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 9.3e-07 57.0 76 44.7
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.2e-06 56.6 88 39.8
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.2e-06 56.6 76 43.4
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 1.2e-06 56.6 76 43.4
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.2e-06 56.6 76 44.7
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.2e-06 56.6 76 46.1
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.2e-06 56.6 76 44.7
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.2e-06 56.6 76 44.7
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 1.6e-06 56.2 70 45.7
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.6e-06 56.2 79 44.3
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.6e-06 56.2 76 43.4
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.6e-06 56.2 76 43.4
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.6e-06 56.2 84 42.9
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.6e-06 56.2 76 44.7
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.6e-06 56.2 84 42.9
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.6e-06 56.2 84 42.9
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.1e-06 55.8 91 42.9
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.1e-06 55.8 84 42.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 2.1e-06 55.8 76 43.4
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.1e-06 55.8 73 42.5
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.1e-06 55.8 87 40.2
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.7e-06 55.5 80 43.8
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.7e-06 55.5 80 43.8
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.7e-06 55.5 84 42.9
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.7e-06 55.5 76 43.4
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 2.7e-06 55.5 76 42.1
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-06 55.5 74 40.5
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-06 55.5 76 43.4
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-06 55.5 76 43.4
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.7e-06 55.5 76 43.4
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 2.7e-06 55.5 79 44.3
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.7e-06 55.5 84 42.9
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 2.7e-06 55.5 76 40.8
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 3.6e-06 55.1 76 43.4
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 3.6e-06 55.1 79 43.0
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.6e-06 55.1 76 43.4
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.6e-06 55.1 74 40.5
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 3.6e-06 55.1 76 43.4
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.6e-06 55.1 84 39.3
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 3.6e-06 55.1 84 39.3
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.6e-06 55.1 79 44.3
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.6e-06 55.1 76 43.4
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.6e-06 55.1 76 42.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.6e-06 55.1 76 44.7
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.6e-06 54.7 76 43.4
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 4.6e-06 54.7 70 44.3
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 6.1e-06 54.3 73 43.8
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 6.1e-06 54.3 76 43.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 6.1e-06 54.3 82 39.0
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 6.1e-06 54.3 90 42.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 6.1e-06 54.3 76 42.1
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 6.1e-06 54.3 72 43.1
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 6.1e-06 54.3 76 42.1
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.1e-06 54.3 76 43.4
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.1e-06 54.3 76 43.4
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 6.1e-06 54.3 76 42.1
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 6.1e-06 54.3 76 42.1
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 7.9e-06 53.9 91 41.8
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 7.9e-06 53.9 91 41.8
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 7.9e-06 53.9 91 41.8
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 7.9e-06 53.9 76 42.1


User provided reference genes

Program Settings