Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g328200 Chlamydomonas reinhardtii HOM05D007177 ORTHO05D008984 1.6e-166 589.3 305 100.0
Mapoly0103s0019 Marchantia polymorpha HOM05D007177 ORTHO05D008984 2.0e-47 193.7 279 41.2
Pp3c27_2770 Physcomitrium patens HOM05D007177 ORTHO05D008984 2.5e-45 186.8 300 40.7
Ah.10g025430 Amaranthus hybridus HOM05D007177 ORTHO05D008984 1.8e-40 170.6 222 42.8
MSTRG.11740 Avicennia marina HOM05D007177 ORTHO05D008984 3.4e-39 166.4 208 42.3
Hund26404 Selenicereus undatus HOM05D007177 ORTHO05D008984 1.7e-38 164.1 223 42.2
GSVIVG01035726001 Vitis vinifera HOM05D007177 ORTHO05D008984 2.2e-38 163.7 213 41.3
Manes.16G068300 Manihot esculenta HOM05D007177 ORTHO05D008984 2.9e-38 163.3 213 41.3
Thecc.09G144000 Theobroma cacao HOM05D007177 ORTHO05D008984 5.0e-38 162.5 252 39.3
Zm00001eb159760 Zea mays HOM05D007177 ORTHO05D008984 6.5e-38 162.2 307 37.1
AL6G22110 Arabidopsis lyrata HOM05D007177 ORTHO05D008984 1.1e-37 161.4 271 37.3
Gohir.A06G048000 Gossypium hirsutum HOM05D007177 ORTHO05D008984 1.1e-37 161.4 213 40.8
Gohir.D06G048000 Gossypium hirsutum HOM05D007177 ORTHO05D008984 1.1e-37 161.4 213 40.8
Gorai.010G053800 Gossypium raimondii HOM05D007177 ORTHO05D008984 1.1e-37 161.4 213 40.8
AT5G11450 Arabidopsis thaliana HOM05D007177 ORTHO05D008984 1.4e-37 161.0 297 35.7
Os01g0617900 Oryza sativa ssp. japonica HOM05D007177 ORTHO05D008984 1.4e-37 161.0 275 37.1
SalBow4G1425 Salvia bowleyana HOM05D007177 ORTHO05D008984 1.4e-37 161.0 223 39.9
CDE01G0003 Ceratophyllum demersum HOM05D007177 ORTHO05D008984 1.9e-37 160.6 212 40.1
FvH4_2g30170 Fragaria vesca HOM05D007177 ORTHO05D008984 1.9e-37 160.6 239 38.9
Nn8g39274 Nelumbo nucifera HOM05D007177 ORTHO05D008984 1.9e-37 160.6 213 41.3
Sabra06G0192800 Salix brachista HOM05D007177 ORTHO05D008984 1.9e-37 160.6 223 39.9
Migut.A00273 Erythranthe guttata HOM05D007177 ORTHO05D008984 2.5e-37 160.2 213 39.9
FAN27G1396 Fragaria x ananassa HOM05D007177 ORTHO05D008984 3.2e-37 159.8 239 38.9
Zm00001eb358300 Zea mays HOM05D007177 ORTHO05D008984 3.2e-37 159.8 259 40.2
Cc08_g08290 Coffea canephora HOM05D007177 ORTHO05D008984 4.2e-37 159.5 210 41.0
Dinv35881 Davidia involucrata HOM05D007177 ORTHO05D008984 4.2e-37 159.5 232 40.1
RcHm_v2.0_Chr6g0312741 Rosa chinensis HOM05D007177 ORTHO05D008984 5.5e-37 159.1 213 39.9
QL12p031282 Quercus lobata HOM05D007177 ORTHO05D008984 7.2e-37 158.7 209 41.6
THA.LOC104815045 Tarenaya hassleriana HOM05D007177 ORTHO05D008984 7.2e-37 158.7 284 38.4
Ciclev10009098m.g Citrus clementina HOM05D007177 ORTHO05D008984 1.2e-36 157.9 225 40.9
CARHR201780 Cardamine hirsuta HOM05D007177 ORTHO05D008984 1.6e-36 157.5 295 35.9
Glyma.06G073600 Glycine max HOM05D007177 ORTHO05D008984 2.1e-36 157.1 247 38.1
Eucgr.G02593 Eucalyptus grandis HOM05D007177 ORTHO05D008984 2.7e-36 156.8 251 39.4
Duzib168G0166 Durio zibethinus HOM05D007177 ORTHO05D008984 3.6e-36 156.4 252 40.1
Thhalv10014231m.g Eutrema salsugineum HOM05D007177 ORTHO05D008984 4.6e-36 156.0 272 37.1
MCO07G393 Micromonas commoda HOM05D007177 ORTHO05D008984 4.6e-36 156.0 194 41.2
MELO3C011212.2 Cucumis melo HOM05D007177 ORTHO05D008984 6.1e-36 155.6 255 38.0
ECA233G2849 Erigeron canadensis HOM05D003107 ORTHO05D008984 6.1e-36 155.6 230 39.1
Sed0014124 Sechium edule HOM05D007177 ORTHO05D008984 6.1e-36 155.6 234 38.5
CANSAT25G2101 Cannabis sativa HOM05D007177 ORTHO05D008984 7.9e-36 155.2 297 34.3
Carub.0006s0990 Capsella rubella HOM05D007177 ORTHO05D008984 7.9e-36 155.2 294 35.0
Phvul.009G098000 Phaseolus vulgaris HOM05D007177 ORTHO05D008984 7.9e-36 155.2 247 37.7
Psat5g027720 Pisum sativum HOM05D007177 ORTHO05D008984 7.9e-36 155.2 213 39.0
Aa31LG3G15740 Aethionema arabicum HOM05D007177 ORTHO05D008984 1.0e-35 154.8 284 35.9
Sp6g32150 Schrenkiella parvula HOM05D007177 ORTHO05D008984 1.0e-35 154.8 303 34.7
CiPaw.08G015800 Carya illinoinensis HOM05D007177 ORTHO05D008984 2.3e-35 153.7 251 38.2
AUR62032383 Chenopodium quinoa HOM05D007177 ORTHO05D008984 2.3e-35 153.7 212 40.1
CsaV3_2G031600 Cucumis sativus L. HOM05D007177 ORTHO05D008984 2.3e-35 153.7 260 37.7
Lj7A712G53 Lonicera japonica HOM05D007177 ORTHO05D008984 3.0e-35 153.3 285 36.8
A10p26300 Brassica napus HOM05D007177 ORTHO05D008984 3.9e-35 152.9 297 34.7
BraA10t44687Z Brassica rapa HOM05D007177 ORTHO05D008984 3.9e-35 152.9 297 34.7
DCAR_006262 Daucus carota HOM05D007177 ORTHO05D008984 3.9e-35 152.9 260 38.1
arahy.Tifrunner.gnm1.ann1.JYH77Y Arachis hypogaea HOM05D007177 ORTHO05D008984 5.1e-35 152.5 213 39.4
Peaxi162Scf00105g01429 Petunia axillaris HOM05D007177 ORTHO05D008984 6.7e-35 152.1 208 40.9
vmacro11111 Vaccinium macrocarpon HOM05D007177 ORTHO05D008984 6.7e-35 152.1 213 38.5
Cpa.g.sc91.5 Carica papaya HOM05D007177 ORTHO05D008984 8.8e-35 151.8 208 39.9
Hma1.2p1_0175F.1_g077220 Hydrangea macrophylla HOM05D007177 ORTHO05D008984 8.8e-35 151.8 212 37.3
TWI32G0279 Tripterygium wilfordii HOM05D007177 ORTHO05D008984 8.8e-35 151.8 289 34.9
MD08G1136300 Malus domestica HOM05D007177 ORTHO05D008984 1.1e-34 151.4 272 36.8
BcaB08g37058 Brassica carinata HOM05D007177 ORTHO05D008984 1.5e-34 151.0 301 34.6
CSS0040333 Camellia sinensis var. sinensis HOM05D007177 ORTHO05D008984 2.0e-34 150.6 213 39.4
CAN.G21.13 Capsicum annuum HOM05D007177 ORTHO05D008984 2.0e-34 150.6 261 38.3
Lsat_1_v5_gn_6_10880 Lactuca sativa HOM05D003107 ORTHO05D008984 2.0e-34 150.6 210 39.5
unitig_748.g7498 Utricularia gibba HOM05D007177 ORTHO05D008984 2.0e-34 150.6 218 37.2
C09p65410 Brassica napus HOM05D007177 ORTHO05D008984 2.6e-34 150.2 294 34.4
BolC9t59366H Brassica oleracea HOM05D007177 ORTHO05D008984 2.6e-34 150.2 294 34.4
TPR.G34677 Trifolium pratense HOM05D007177 ORTHO05D008984 2.6e-34 150.2 224 37.1
BcaC04g19225 Brassica carinata HOM05D007177 ORTHO05D008984 3.3e-34 149.8 294 34.0
VMungo1309G2383 Vigna mungo HOM05D007177 ORTHO05D008984 3.3e-34 149.8 284 36.3
MD15G1115400 Malus domestica HOM05D007177 ORTHO05D008984 4.4e-34 149.4 261 36.8
Lj1g0018262 Lotus japonicus HOM05D007177 ORTHO05D008984 7.4e-34 148.7 258 37.2
Nitab4.5_0000125g0190 Nicotiana tabacum HOM05D007177 ORTHO05D008984 9.7e-34 148.3 267 36.3
Nitab4.5_0009600g0010 Nicotiana tabacum HOM05D007177 ORTHO05D008984 9.7e-34 148.3 265 36.2
Atru.chr7.2324 Acer truncatum HOM05D007177 ORTHO05D008984 2.8e-33 146.7 252 37.3
Lalb_Chr23g0269021 Lupinus albus HOM05D007177 ORTHO05D008984 2.8e-33 146.7 247 36.4
Medtr3g108040 Medicago truncatula HOM05D007177 ORTHO05D008984 2.8e-33 146.7 213 37.6
TAR383G0793 Trochodendron aralioides HOM05D007177 ORTHO05D008984 2.8e-33 146.7 295 35.3
Rhsim02G0187100 Rhododendron simsii HOM05D007177 ORTHO05D008984 6.3e-33 145.6 213 38.0
CiPaw.07G217700 Carya illinoinensis HOM05D007177 ORTHO05D008984 1.1e-32 144.8 281 34.9
Solyc08g067840.3 Solanum lycopersicum HOM05D007177 ORTHO05D008984 1.1e-32 144.8 270 36.7
Potri.006G246500 Populus trichocarpa HOM05D007177 ORTHO05D008984 1.4e-32 144.4 282 34.4
Sopen08g021780 Solanum pennellii HOM05D007177 ORTHO05D008984 1.4e-32 144.4 270 36.7
PSO782G2748 Papaver somniferum HOM05D007177 ORTHO05D008984 6.9e-32 142.1 208 38.0
HPP92_021881 Vanilla planifolia HOM05D007177 ORTHO05D008984 6.9e-32 142.1 281 35.2
HanXRQChr02g0048101 Helianthus annuus HOM05D007177 ORTHO05D008984 9.1e-32 141.7 257 36.6
PSO063G2030 Papaver somniferum HOM05D007177 ORTHO05D008984 1.5e-31 141.0 208 37.5
AUR62024834 Chenopodium quinoa HOM05D007177 ORTHO05D008984 3.2e-29 133.3 229 34.9
arahy.Tifrunner.gnm1.ann1.22L7FB Arachis hypogaea HOM05D007177 ORTHO05D008984 8.0e-28 128.6 213 36.2
ClCG08G012880 Citrullus lanatus HOM05D007177 ORTHO05D008984 1.0e-27 128.3 300 30.7
Aqoxy7G01836 Aquilegia oxysepala HOM05D007177 ORTHO05D008984 8.8e-27 125.2 178 39.3
AUR62011224 Chenopodium quinoa HOM05D007177 ORTHO05D008984 1.1e-26 124.8 172 39.0
Glyma.04G072300 Glycine max HOM05D007177 ORTHO05D008984 1.1e-26 124.8 222 36.0
FAN24G2430 Fragaria x ananassa HOM05D007177 ORTHO05D008984 1.5e-26 124.4 204 37.7
ATR0037G062 Amborella trichopoda HOM05D007177 ORTHO05D008984 3.3e-26 123.2 179 40.2
COL.COLO4_24067 Corchorus olitorius HOM05D007177 ORTHO05D008984 1.7e-25 120.9 211 35.5
PGR102G2243 Punica granatum HOM05D007177 ORTHO05D008984 4.8e-25 119.4 257 33.1
Actinidia13290 Actinidia chinensis HOM05D007177 ORTHO05D008984 6.3e-25 119.0 291 32.3
Haze_21624 Corylus avellana HOM05D007177 ORTHO05D008984 1.1e-24 118.2 213 33.8
SEGI_07055 Sequoiadendron giganteum HOM05D007177 ORTHO05D008984 9.1e-24 115.2 130 44.6
Cfa013211 Carpinus fangiana HOM05D007177 ORTHO05D008984 1.6e-23 114.4 158 40.5
Prupe.1G466600 Prunus persica HOM05D007177 ORTHO05D008984 2.9e-22 110.2 166 38.6
Ca_15697_v3 Cicer arietinum L. HOM05D007177 ORTHO05D008984 2.1e-20 104.0 182 37.4
EL10Ac2g02536 Beta vulgaris HOM05D007177 ORTHO05D008984 3.6e-20 103.2 184 33.7
FAN15G3007 Fragaria x ananassa HOM05D007177 ORTHO05D008984 8.0e-20 102.1 202 34.2
FAN20G1087 Fragaria x ananassa HOM05D007177 ORTHO05D008984 8.0e-20 102.1 202 34.2
Sc23g0007000 Simmondsia chinensis HOM05D007177 ORTHO05D008984 1.2e-15 88.2 181 33.7
SGA_v2.0_scaffold27G11496 Striga asiatica HOM05D007177 ORTHO05D008984 2.7e-15 87.0 213 31.5
Gohir.D06G048101 Gossypium hirsutum HOM05D007177 ORTHO05D008984 1.3e-14 84.7 103 38.8
Hma1.2p1_0175F.1_g077230 Hydrangea macrophylla HOM05D007177 ORTHO05D008984 3.4e-10 70.1 112 33.0


User provided reference genes

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