Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 6.9e-159 563.9 286 100.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.8e-75 286.2 297 49.2
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 4.5e-65 252.3 281 47.0
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 5.5e-63 245.4 229 51.5
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.8e-61 240.4 293 43.7
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.3e-40 171.0 243 41.2
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.2e-39 166.0 216 38.9
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.2e-38 164.5 216 39.4
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.7e-38 162.5 216 38.9
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 4.7e-38 162.5 217 39.2
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 7.9e-38 161.8 251 35.9
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 7.9e-38 161.8 230 36.1
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.0e-37 161.4 251 35.9
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.4e-37 161.0 236 35.6
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.8e-37 160.6 225 36.9
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.3e-37 160.2 216 39.4
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.7e-37 158.7 225 37.8
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.7e-37 158.7 214 38.3
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.1e-36 157.9 217 36.4
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.1e-36 157.9 225 37.8
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.3e-36 156.4 215 38.1
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.3e-36 156.4 250 34.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 3.3e-36 156.4 239 35.6
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 4.4e-36 156.0 242 34.3
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.7e-36 155.6 219 37.4
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 7.4e-36 155.2 213 36.6
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 7.4e-36 155.2 223 37.7
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.4e-36 155.2 206 37.9
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 9.7e-36 154.8 217 38.2
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.8e-35 153.3 219 36.5
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.2e-35 151.8 219 36.5
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 8.2e-35 151.8 223 37.7
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.1e-34 151.4 218 35.3
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-34 151.4 220 36.8
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.4e-34 151.0 214 36.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.4e-34 151.0 223 37.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.4e-34 151.0 210 37.6
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.4e-34 151.0 237 33.3
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.4e-34 151.0 242 34.3
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.8e-34 150.6 223 37.7
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 3.1e-34 149.8 240 32.9
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.1e-34 149.8 223 37.2
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 3.1e-34 149.8 217 36.4
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 7.0e-34 148.7 223 36.8
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.6e-33 146.7 225 34.7
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.6e-33 146.7 225 34.7
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 4.5e-33 146.0 231 34.6
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.5e-33 146.0 217 35.0
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.9e-33 145.6 216 36.6
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.9e-33 145.6 216 36.6
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.0e-32 144.8 216 36.6
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-32 144.8 216 36.6
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-32 144.4 216 36.1
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.7e-32 144.1 223 35.4
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.7e-32 144.1 225 33.3
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 2.9e-32 143.3 213 35.7
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.8e-32 142.9 207 36.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 5.0e-32 142.5 213 36.6
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 5.0e-32 142.5 213 35.7
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.1e-31 141.4 219 33.8
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.5e-31 141.0 199 38.7
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.9e-31 140.6 216 36.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.5e-31 140.2 221 33.5
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.2e-31 139.8 224 34.4
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.2e-31 139.4 217 34.1
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 4.2e-31 139.4 202 34.2
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 5.5e-31 139.0 210 35.2
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.5e-31 139.0 221 33.5
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 5.5e-31 139.0 213 36.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.2e-31 138.7 217 35.5
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.2e-31 138.7 217 35.5
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.2e-30 137.9 219 34.7
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.2e-30 137.9 217 32.3
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.6e-30 137.5 217 35.9
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.1e-30 137.1 224 33.9
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 4.7e-30 136.0 216 36.1
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 4.7e-30 136.0 216 35.6
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 6.1e-30 135.6 238 31.5
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 6.1e-30 135.6 223 33.6
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.4e-29 134.4 217 34.6
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.0e-29 133.3 233 33.5
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 5.2e-29 132.5 229 33.2
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 6.7e-29 132.1 221 35.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 8.8e-29 131.7 231 32.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-28 131.3 224 32.6
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.2e-28 131.3 218 34.4
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.5e-28 131.0 235 32.8
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.5e-28 131.0 225 33.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.6e-28 130.2 215 34.0
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.3e-28 129.8 220 35.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.3e-28 129.8 215 34.0
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 4.4e-28 129.4 209 32.5
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 7.5e-28 128.6 218 34.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 7.5e-28 128.6 219 34.7
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.7e-28 128.3 213 33.8
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.3e-27 127.9 215 33.0
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.3e-27 127.9 216 33.3
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.2e-27 127.1 217 35.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 2.8e-27 126.7 217 32.3
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 3.7e-27 126.3 197 34.5
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 6.3e-27 125.6 215 33.0
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.1e-26 124.8 215 30.7
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.4e-26 124.4 221 31.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.8e-26 124.0 219 34.2
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 2.4e-26 123.6 224 33.0
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 9.1e-26 121.7 225 28.4
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 3.5e-25 119.8 194 33.0
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 7.7e-25 118.6 184 37.5
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.3e-24 117.9 217 31.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.7e-24 117.5 154 40.3
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.8e-24 116.3 231 32.0
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 8.5e-24 115.2 185 33.5
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.5e-23 114.4 206 28.6
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.5e-23 113.6 232 29.3
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 4.2e-23 112.8 227 30.4
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 5.5e-23 112.5 200 34.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.1e-22 110.5 210 31.4
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 3.6e-22 109.8 224 29.9
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 4.7e-22 109.4 220 30.9
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.8e-21 107.5 228 30.7
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.8e-21 107.5 228 30.7
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 4.0e-21 106.3 215 27.0
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 5.2e-21 105.9 227 30.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 6.8e-21 105.5 227 30.8
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 6.8e-21 105.5 227 30.8
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 6.8e-21 105.5 157 36.3
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.5e-20 104.4 148 34.5
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 4.4e-20 102.8 160 34.4
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.4e-20 102.8 153 34.6
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 7.5e-20 102.1 153 34.0
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 7.5e-20 102.1 213 27.7
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.2e-19 100.5 217 29.0
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.8e-19 99.4 220 29.1
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.3e-19 99.0 182 33.5
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 6.3e-19 99.0 183 31.7
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.4e-18 97.8 152 38.2
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.4e-18 97.1 157 33.1
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 4.1e-18 96.3 149 32.2
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 4.1e-18 96.3 230 30.0
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 5.4e-18 95.9 217 28.1
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.6e-17 94.4 152 30.9
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.6e-17 94.4 194 32.0
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.6e-17 94.4 215 28.8
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 3.5e-17 93.2 226 26.5
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 5.9e-17 92.4 165 32.1
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 7.7e-17 92.0 118 35.6
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 7.7e-17 92.0 212 28.8
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 7.7e-17 92.0 182 30.2
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-16 91.3 220 27.7
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.7e-16 90.9 218 29.4
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 6.5e-16 89.0 215 27.4
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.5e-16 89.0 176 31.2
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.2e-15 86.7 225 28.0
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.2e-15 86.7 225 28.0
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 3.2e-15 86.7 218 28.9
CBR_g39324 Chara braunii HOM05D003762 ORTHO05D004374 3.2e-15 86.7 89 52.8
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 4.7e-14 82.8 223 27.4
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-13 81.6 120 35.0
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.4e-13 81.3 107 36.4
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.8e-13 80.9 76 43.4
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.3e-13 80.5 147 30.6
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 3.4e-12 76.6 109 35.8
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 5.7e-12 75.9 76 48.7
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.7e-11 74.3 165 27.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.3e-11 72.4 88 40.9
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-10 71.6 95 40.0
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.0e-09 67.4 95 37.9
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.0e-08 65.1 78 34.6
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.7e-08 64.3 102 38.2
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.5e-07 60.5 84 38.1
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 3.3e-07 60.1 138 29.7
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 9.5e-07 58.5 41 56.1


User provided reference genes

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