Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 0.0e+00 1821.2 1128 100.0
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 3.1e-61 241.5 998 28.0
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.8e-46 191.0 617 28.7
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.8e-45 189.1 620 27.6
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.0e-40 173.3 991 23.4
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.0e-36 159.1 619 26.5
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 3.8e-35 154.8 1102 27.3
Cre07.g312150 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.2e-28 133.3 900 25.8
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 3.3e-26 125.2 978 23.0
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 9.2e-21 107.1 334 30.2
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-20 105.9 317 26.8
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 5.2e-16 91.3 155 34.8
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 1.2e-15 90.1 434 25.1
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.2e-15 90.1 703 22.5
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 3.4e-15 88.6 449 25.6
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 3.4e-15 88.6 434 25.1
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 5.8e-15 87.8 556 21.9
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 7.5e-15 87.4 431 24.6
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 9.8e-15 87.0 434 25.1
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.3e-14 86.7 438 25.6
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.3e-14 86.7 434 24.4
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 1.7e-14 86.3 434 24.9
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 2.2e-14 85.9 438 25.6
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 2.2e-14 85.9 553 22.6
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.2e-14 85.9 556 22.1
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 2.2e-14 85.9 431 24.1
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 2.9e-14 85.5 445 25.4
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.9e-14 85.5 438 25.1
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 2.9e-14 85.5 434 24.7
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 2.9e-14 85.5 434 23.7
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 3.7e-14 85.1 553 22.2
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 4.9e-14 84.7 435 23.2
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 6.4e-14 84.3 442 24.9
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 6.4e-14 84.3 435 26.0
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 6.4e-14 84.3 553 23.1
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 8.3e-14 84.0 435 23.2
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.1e-13 83.6 438 25.3
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.4e-13 83.2 132 38.6
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 1.4e-13 83.2 555 22.5
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.4e-13 83.2 434 24.0
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 1.4e-13 83.2 431 24.1
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 1.4e-13 83.2 434 23.3
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 1.9e-13 82.8 431 24.1
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.4e-13 82.4 439 23.9
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.2e-13 82.0 129 34.1
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 3.2e-13 82.0 125 36.0
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 4.1e-13 81.6 556 22.3
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 4.1e-13 81.6 431 23.7
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 5.4e-13 81.3 435 24.6
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 7.0e-13 80.9 556 21.6
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 7.0e-13 80.9 576 21.7
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 7.0e-13 80.9 435 25.3
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 9.2e-13 80.5 556 21.9
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 9.2e-13 80.5 442 23.5
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 9.2e-13 80.5 431 24.1
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 9.2e-13 80.5 556 21.9
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 1.2e-12 80.1 129 34.9
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 1.2e-12 80.1 131 34.4
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.2e-12 80.1 556 21.8
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 1.6e-12 79.7 430 24.7
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.6e-12 79.7 435 25.3
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 2.0e-12 79.3 434 24.7
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 2.0e-12 79.3 434 23.3
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 2.0e-12 79.3 431 24.1
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 2.7e-12 79.0 434 23.3
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 3.5e-12 78.6 441 23.4
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 4.6e-12 78.2 136 34.6
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.6e-12 78.2 130 36.9
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 6.0e-12 77.8 558 22.8
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 6.0e-12 77.8 129 34.1
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 6.0e-12 77.8 437 22.4
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 7.8e-12 77.4 130 34.6
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 7.8e-12 77.4 556 21.8
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 7.8e-12 77.4 437 24.0
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.0e-11 77.0 125 34.4
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 1.0e-11 77.0 431 23.4
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 1.0e-11 77.0 556 20.9
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.0e-11 77.0 135 37.0
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 1.3e-11 76.6 129 31.0
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.3e-11 76.6 130 36.2
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.3e-11 76.6 432 24.3
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 1.3e-11 76.6 432 24.3
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 1.7e-11 76.3 129 32.6
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 2.3e-11 75.9 441 24.7
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 2.3e-11 75.9 431 23.9
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.9e-11 75.1 442 24.4
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 3.9e-11 75.1 436 24.8
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.6e-11 74.3 132 31.8
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 8.6e-11 73.9 435 24.4
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 1.1e-10 73.6 440 22.7
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 1.5e-10 73.2 425 23.8
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 3.3e-10 72.0 431 23.7
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 3.3e-10 72.0 432 24.5
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 3.3e-10 72.0 432 24.5
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.3e-10 72.0 538 24.7
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 4.3e-10 71.6 554 22.0
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.3e-10 70.9 432 25.2
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.3e-10 70.9 121 33.9
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 9.5e-10 70.5 106 45.3
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 9.5e-10 70.5 129 33.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.2e-09 70.1 128 35.9
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 1.6e-09 69.7 437 23.3
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 1.6e-09 69.7 437 23.3
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 2.1e-09 69.3 450 22.9
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 2.1e-09 69.3 448 23.0
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.8e-09 68.9 432 24.8
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 2.8e-09 68.9 201 27.9
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 1.8e-08 66.2 163 28.8
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 1.2e-07 63.5 436 22.5
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.0e-07 62.8 129 33.3
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 4.4e-07 61.6 385 23.9
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 7.5e-07 60.8 104 32.7
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 7.5e-07 60.8 104 32.7
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 7.5e-07 60.8 130 31.5
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.9e-06 58.9 398 25.1
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 4.9e-06 58.2 142 36.6
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 4.9e-06 58.2 89 42.7


User provided reference genes

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