Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 0.0e+00 1450.3 930 100.0
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.4e-122 443.7 842 41.4
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 5.7e-53 213.8 620 30.6
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 9.8e-53 213.0 609 31.7
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 3.1e-51 208.0 534 31.3
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 5.9e-50 203.8 614 29.0
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 3.3e-48 198.0 534 30.7
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 4.2e-48 197.6 610 29.8
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.6e-47 195.7 535 31.0
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.6e-47 195.7 615 29.3
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.6e-47 195.7 610 29.7
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 2.1e-47 195.3 544 30.7
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 3.6e-47 194.5 598 29.3
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 4.7e-47 194.1 610 28.5
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 6.1e-47 193.7 610 28.5
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 8.0e-47 193.4 610 29.3
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 1.0e-46 193.0 610 28.7
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.0e-46 193.0 534 30.7
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 2.3e-46 191.8 611 29.0
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 6.8e-46 190.3 610 28.9
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 8.9e-46 189.9 613 28.9
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.2e-45 189.5 534 30.1
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 2.6e-45 188.3 597 27.6
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 3.4e-45 188.0 610 28.9
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 4.4e-45 187.6 593 28.7
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 4.4e-45 187.6 535 29.9
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 4.4e-45 187.6 593 29.8
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 4.4e-45 187.6 544 29.2
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 7.5e-45 186.8 592 28.4
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 7.5e-45 186.8 614 27.7
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 9.8e-45 186.4 535 28.6
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.3e-44 186.0 613 29.2
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 1.7e-44 185.7 610 27.9
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 1.7e-44 185.7 535 29.5
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.2e-44 185.3 598 28.4
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.9e-44 184.9 539 29.1
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.9e-44 184.9 534 29.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 3.7e-44 184.5 545 29.0
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 4.9e-44 184.1 539 29.3
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 4.9e-44 184.1 610 27.4
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 1.4e-43 182.6 535 28.2
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 4.1e-43 181.0 612 29.9
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 4.1e-43 181.0 610 27.5
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 9.2e-43 179.9 600 27.8
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.2e-42 179.5 593 27.3
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.6e-42 179.1 539 29.1
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.0e-42 178.7 610 28.9
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 2.0e-42 178.7 593 28.5
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 2.7e-42 178.3 535 29.5
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.0e-41 176.4 610 28.0
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.3e-41 176.0 535 29.7
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.3e-41 176.0 506 30.4
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.7e-41 175.6 534 27.7
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 1.7e-41 175.6 612 28.8
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 2.3e-41 175.3 517 30.0
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.9e-41 174.9 534 26.8
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 2.9e-41 174.9 610 27.5
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 3.9e-41 174.5 610 28.0
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 6.6e-41 173.7 611 27.8
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 6.6e-41 173.7 610 28.0
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 1.5e-40 172.6 646 27.4
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 1.5e-40 172.6 548 29.2
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.5e-40 172.6 622 28.5
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 1.5e-40 172.6 539 28.4
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.9e-40 172.2 593 27.8
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 3.3e-40 171.4 613 27.9
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 4.3e-40 171.0 613 27.9
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 5.6e-40 170.6 593 28.0
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 7.3e-40 170.2 614 28.3
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.2e-39 169.5 534 28.3
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 2.8e-39 168.3 534 28.5
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 4.7e-39 167.5 617 26.7
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 1.0e-38 166.4 534 28.8
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.0e-38 166.4 534 28.7
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.3e-38 165.2 593 27.3
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 7.5e-37 160.2 631 27.1
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 9.8e-37 159.8 535 28.0
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.7e-36 159.1 502 29.5
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 5.4e-35 154.1 494 28.5
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 5.4e-35 154.1 504 29.6
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 7.0e-35 153.7 459 28.8
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 9.2e-35 153.3 505 28.1
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 9.2e-35 153.3 515 28.2
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 4.6e-34 151.0 694 28.5
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.3e-33 148.7 394 30.5
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 3.0e-33 148.3 550 27.8
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 5.0e-33 147.5 509 30.5
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 2.1e-31 142.1 504 28.2
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 8.1e-31 140.2 583 25.9
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 6.8e-30 137.1 462 29.2
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 9.8e-29 133.3 505 26.9
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 1.7e-28 132.5 548 27.7
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 8.3e-28 130.2 353 28.6
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 3.2e-27 128.3 644 24.7
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 1.2e-26 126.3 526 26.8
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.3e-25 122.1 262 32.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 1.5e-24 119.4 360 30.0
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.4e-22 112.8 274 28.8
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.8e-22 110.5 354 29.1
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 2.0e-21 109.0 311 28.3
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.4e-19 102.1 344 29.1
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 3.9e-17 94.7 168 35.1
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 5.1e-17 94.4 175 32.6
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 2.5e-16 92.0 121 38.8
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 3.1e-14 85.1 206 32.0
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 1.7e-12 79.3 246 29.3
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 5.4e-11 74.3 290 26.6
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 4.6e-10 71.2 187 30.5
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 5.6e-08 64.3 333 27.6
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 9.6e-08 63.5 207 31.9
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.3e-07 63.2 386 24.9
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.6e-07 62.8 246 26.8
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 8.1e-07 60.5 243 27.6
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 2.4e-06 58.9 609 24.1


User provided reference genes

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