Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 5.7e-187 657.5 352 100.0
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.6e-16 90.1 94 52.1
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 2.3e-15 87.4 136 41.2
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 6.4e-13 79.3 104 48.1
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 6.4e-13 79.3 133 42.1
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 1.1e-12 78.6 99 46.5
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.9e-12 77.8 97 46.4
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 2.4e-12 77.4 123 39.0
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 2.4e-12 77.4 97 46.4
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 2.4e-12 77.4 97 46.4
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 4.1e-12 76.6 101 45.5
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 7.1e-12 75.9 141 36.9
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 7.1e-12 75.9 103 45.6
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 7.1e-12 75.9 103 45.6
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 7.1e-12 75.9 101 45.5
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 9.2e-12 75.5 101 43.6
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 1.2e-11 75.1 101 46.5
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.2e-11 75.1 80 48.8
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 1.2e-11 75.1 99 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.6e-11 74.7 93 47.3
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.6e-11 74.7 97 43.3
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.6e-11 74.7 101 44.6
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 1.6e-11 74.7 101 44.6
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 1.6e-11 74.7 141 38.3
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 2.1e-11 74.3 91 47.3
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 2.1e-11 74.3 102 44.1
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 2.7e-11 73.9 101 43.6
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 2.7e-11 73.9 101 44.6
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.7e-11 73.9 101 43.6
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 2.7e-11 73.9 101 45.5
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 3.5e-11 73.6 101 44.6
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 3.5e-11 73.6 101 44.6
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.5e-11 73.6 100 39.0
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 3.5e-11 73.6 94 45.7
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 3.5e-11 73.6 96 45.8
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 4.6e-11 73.2 101 42.6
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.6e-11 73.2 101 42.6
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 4.6e-11 73.2 101 44.6
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 4.6e-11 73.2 101 44.6
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 4.6e-11 73.2 101 43.6
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 6.0e-11 72.8 101 44.6
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 6.0e-11 72.8 101 44.6
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 6.0e-11 72.8 95 46.3
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 6.0e-11 72.8 91 48.4
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 6.0e-11 72.8 99 42.4
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 7.8e-11 72.4 144 37.5
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 7.8e-11 72.4 144 37.5
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 7.8e-11 72.4 101 42.6
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.8e-11 72.4 101 42.6
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 7.8e-11 72.4 101 44.6
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 7.8e-11 72.4 140 36.4
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 1.0e-10 72.0 101 44.6
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 1.0e-10 72.0 101 44.6
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 1.0e-10 72.0 101 44.6
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 1.0e-10 72.0 101 44.6
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 1.0e-10 72.0 101 42.6
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 1.3e-10 71.6 101 44.6
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 1.3e-10 71.6 101 43.6
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 1.3e-10 71.6 101 43.6
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.3e-10 71.6 102 43.1
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.3e-10 71.6 98 42.9
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.3e-10 71.6 99 42.4
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 1.3e-10 71.6 101 44.6
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.7e-10 71.2 101 41.6
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.7e-10 71.2 132 36.4
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 1.7e-10 71.2 101 45.5
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 1.7e-10 71.2 101 45.5
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 2.3e-10 70.9 101 44.6
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.3e-10 70.9 101 41.6
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 2.3e-10 70.9 101 44.6
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 2.3e-10 70.9 101 41.6
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 2.3e-10 70.9 101 42.6
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 3.0e-10 70.5 141 36.2
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 3.0e-10 70.5 97 43.3
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 3.0e-10 70.5 101 43.6
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 3.9e-10 70.1 101 44.6
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 3.9e-10 70.1 101 44.6
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 3.9e-10 70.1 143 37.1
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 3.9e-10 70.1 101 43.6
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 3.9e-10 70.1 101 43.6
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 5.1e-10 69.7 101 42.6
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 5.1e-10 69.7 101 41.6
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.1e-10 69.7 101 40.6
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 5.1e-10 69.7 95 47.4
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 5.1e-10 69.7 99 40.4
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 6.6e-10 69.3 100 40.0
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 8.6e-10 68.9 101 42.6
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 8.6e-10 68.9 101 42.6
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 1.1e-09 68.6 145 35.2
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.1e-09 68.6 93 40.9
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.1e-09 68.6 101 40.6
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.1e-09 68.6 131 36.6
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 1.1e-09 68.6 101 42.6
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-09 68.2 101 41.6
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.5e-09 68.2 94 43.6
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.9e-09 67.8 101 42.6
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.5e-09 67.4 106 45.3
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.5e-09 67.4 98 40.8
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.5e-09 67.4 101 38.6
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.3e-09 67.0 98 40.8
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 4.3e-09 66.6 103 41.7
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 5.6e-09 66.2 141 34.0
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 7.3e-09 65.9 94 40.4
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 7.3e-09 65.9 149 36.2
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-08 64.7 147 32.0
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 2.1e-08 64.3 100 38.0
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 2.8e-08 63.9 156 34.0
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.3e-07 60.8 145 34.5


User provided reference genes

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