Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 0.0e+00 1174.5 641 100.0
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.8e-112 409.8 644 39.9
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.4e-111 407.1 661 38.9
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.2e-110 404.8 644 39.0
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 6.0e-110 402.5 655 39.2
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 7.8e-110 402.1 661 38.7
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 3.0e-109 400.2 645 39.2
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 8.7e-109 398.7 637 38.5
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 4.3e-108 396.4 659 38.1
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 5.6e-108 396.0 655 38.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.6e-108 396.0 655 38.5
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.2e-107 394.8 640 37.3
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.2e-107 394.8 643 38.4
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.2e-107 394.8 655 38.8
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.6e-107 394.4 645 38.0
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.6e-107 393.3 647 38.6
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 3.6e-107 393.3 649 37.8
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 6.2e-107 392.5 645 38.3
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 8.1e-107 392.1 643 38.4
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 8.1e-107 392.1 643 38.4
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.1e-106 391.7 651 39.3
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.1e-106 391.7 659 38.1
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.4e-106 391.3 644 38.2
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.8e-106 391.0 644 38.4
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.8e-106 391.0 660 37.3
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.4e-106 390.6 652 38.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.4e-106 390.6 644 37.4
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.4e-106 390.6 646 38.7
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 3.1e-106 390.2 642 37.7
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 3.1e-106 390.2 641 39.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 4.0e-106 389.8 653 37.8
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 4.0e-106 389.8 663 38.5
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 5.3e-106 389.4 657 38.8
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 9.0e-106 388.7 651 38.6
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 9.0e-106 388.7 657 38.4
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.2e-105 388.3 650 38.9
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.2e-105 388.3 664 38.3
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.5e-105 387.9 652 38.8
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 2.0e-105 387.5 640 38.3
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 2.6e-105 387.1 651 37.9
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.4e-105 386.7 649 37.4
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 4.4e-105 386.3 645 37.4
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 7.6e-105 385.6 645 38.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 7.6e-105 385.6 652 39.4
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 9.9e-105 385.2 649 37.8
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.3e-104 384.8 644 39.1
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.7e-104 384.4 650 38.6
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 2.2e-104 384.0 645 38.1
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.9e-104 383.6 652 37.7
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 2.9e-104 383.6 647 37.9
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 3.8e-104 383.3 645 38.1
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 3.8e-104 383.3 647 38.5
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 4.9e-104 382.9 647 37.4
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 4.9e-104 382.9 648 38.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 6.4e-104 382.5 644 38.2
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 8.4e-104 382.1 647 37.4
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.1e-103 381.7 650 37.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.1e-103 381.7 648 37.3
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.4e-103 381.3 660 36.8
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.9e-103 380.9 650 38.0
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.4e-103 380.6 642 38.2
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 3.2e-103 380.2 648 37.7
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 3.2e-103 380.2 607 38.2
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.2e-103 379.8 650 38.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.2e-102 378.3 648 37.3
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 2.7e-102 377.1 656 37.7
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 2.7e-102 377.1 647 38.5
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 3.5e-102 376.7 643 37.3
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 3.5e-102 376.7 626 38.3
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 6.0e-102 375.9 650 38.6
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.0e-101 375.2 648 37.2
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.3e-101 374.8 648 37.7
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 5.1e-101 372.9 646 37.2
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.9e-100 370.9 646 37.5
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.9e-100 370.9 642 36.3
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.8e-99 367.1 644 37.0
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.8e-99 367.1 659 36.4
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 8.1e-99 365.5 593 39.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.4e-98 364.8 662 37.6
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.0e-97 360.9 647 37.1
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 7.6e-97 359.0 698 36.1
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.2e-96 357.5 714 35.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.9e-96 356.3 578 39.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.4e-95 354.8 637 36.1
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.7e-94 350.5 617 37.8
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.3e-93 348.2 616 36.9
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 7.4e-92 342.4 645 36.4
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 4.8e-91 339.7 577 36.7
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 1.3e-88 331.6 647 36.6
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.4e-87 328.2 660 35.0
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 6.0e-86 322.8 535 39.4
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.1e-84 318.5 535 39.4
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.3e-84 317.0 651 33.9
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 6.2e-83 312.8 769 30.8
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 8.2e-83 312.4 556 36.3
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.6e-78 298.1 641 33.5
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-67 260.8 345 42.6
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 2.6e-65 254.2 345 41.2
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.4e-65 253.8 525 34.7
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 7.7e-65 252.7 345 41.4
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.1e-58 230.3 443 36.6
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.6e-54 217.2 714 28.7
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.8e-50 204.9 377 37.4
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 5.0e-48 196.8 296 38.5
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 2.6e-44 184.5 279 38.7
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.7e-43 181.8 279 36.9
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 8.3e-43 179.5 205 45.4
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.4e-42 178.7 383 35.5
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.7e-41 174.5 275 37.8
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.2e-38 165.6 266 36.8
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.2e-37 160.2 333 35.1
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 9.5e-31 139.4 188 41.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 8.9e-29 132.9 172 41.9
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 4.3e-23 114.0 141 40.4
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-22 112.1 116 48.3
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.1e-22 111.7 99 56.6
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-21 107.8 99 54.5
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-21 107.5 106 50.0
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 6.8e-21 106.7 105 49.5
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-19 102.4 96 54.2
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 8.3e-19 99.8 223 34.5
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-18 98.6 104 47.1
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-16 92.4 95 50.5
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 5.0e-16 90.5 94 44.7
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-14 85.1 122 39.3
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 2.1e-14 85.1 67 59.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 8.9e-13 79.7 88 45.5
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 8.3e-11 73.2 68 52.9
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.6e-09 68.9 66 48.5
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-07 62.0 68 51.5
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 4.3e-07 60.8 524 21.4
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 9.5e-07 59.7 72 41.7
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.1e-06 58.5 53 49.1


User provided reference genes

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