Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g283150 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D004048 2.5e-118 429.1 273 100.0
Lsat_1_v5_gn_3_43721 Lactuca sativa HOM05D001891 ORTHO05D004048 2.5e-17 93.6 164 38.4
BcaC01g03476 Brassica carinata HOM05D001891 ORTHO05D004048 3.3e-17 93.2 159 39.0
C03p52060 Brassica napus HOM05D001891 ORTHO05D004048 3.3e-17 93.2 159 39.0
Dinv39686 Davidia involucrata HOM05D001891 ORTHO05D004048 1.3e-16 91.3 159 37.1
VMungo1080G1612 Vigna mungo HOM05D001891 ORTHO05D004048 1.6e-16 90.9 160 38.1
BcaB04g19187 Brassica carinata HOM05D001891 ORTHO05D004048 2.1e-16 90.5 159 38.4
BcaB06g26288 Brassica carinata HOM05D001891 ORTHO05D004048 2.1e-16 90.5 160 37.5
BraA03t13403Z Brassica rapa HOM05D001891 ORTHO05D004048 2.1e-16 90.5 159 38.4
Glyma.12G195800 Glycine max HOM05D001891 ORTHO05D004048 2.1e-16 90.5 160 38.1
A03p42500 Brassica napus HOM05D001891 ORTHO05D004048 2.8e-16 90.1 159 38.4
Haze_12898 Corylus avellana HOM05D001891 ORTHO05D004048 2.8e-16 90.1 159 37.1
DCAR_019211 Daucus carota HOM05D001891 ORTHO05D004048 2.8e-16 90.1 159 36.5
AagrBONN_evm.TU.Sc2ySwM_362.2694 Anthoceros agrestis HOM05D001891 ORTHO05D004048 3.7e-16 89.7 124 41.9
Glyma.13G306700 Glycine max HOM05D001891 ORTHO05D004048 4.8e-16 89.4 160 38.1
BcaC05g28120 Brassica carinata HOM05D001891 ORTHO05D004048 6.2e-16 89.0 160 37.5
A05p26910 Brassica napus HOM05D001891 ORTHO05D004048 6.2e-16 89.0 160 38.1
BraA05t21571Z Brassica rapa HOM05D001891 ORTHO05D004048 6.2e-16 89.0 160 38.1
Lj3g0025447 Lotus japonicus HOM05D001891 ORTHO05D004048 6.2e-16 89.0 160 37.5
QL03p043045 Quercus lobata HOM05D001891 ORTHO05D004048 6.2e-16 89.0 163 35.6
BolC3t17487H Brassica oleracea HOM05D001891 ORTHO05D004048 8.2e-16 88.6 160 38.8
Cc05_g05140 Coffea canephora HOM05D001891 ORTHO05D004048 8.2e-16 88.6 159 36.5
Gohir.D02G187000 Gossypium hirsutum HOM05D001891 ORTHO05D004048 8.2e-16 88.6 159 37.1
Lj1A756G86 Lonicera japonica HOM05D001891 ORTHO05D004048 8.2e-16 88.6 159 37.1
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 1.1e-15 88.2 253 29.6
Migut.M00394 Erythranthe guttata HOM05D001891 ORTHO05D004048 1.1e-15 88.2 159 37.1
Phvul.005G113600 Phaseolus vulgaris HOM05D001891 ORTHO05D004048 1.1e-15 88.2 160 37.5
C05p41520 Brassica napus HOM05D001891 ORTHO05D004048 1.4e-15 87.8 160 37.5
BolC5t32890H Brassica oleracea HOM05D001891 ORTHO05D004048 1.4e-15 87.8 160 37.5
Ciclev10016204m.g Citrus clementina HOM05D001891 ORTHO05D004048 1.4e-15 87.8 159 37.1
Mapoly0037s0074 Marchantia polymorpha HOM05D001891 ORTHO05D004048 1.4e-15 87.8 165 37.6
Pp3c3_16800 Physcomitrium patens HOM05D001891 ORTHO05D004048 1.4e-15 87.8 158 38.0
Pp3c3_16810 Physcomitrium patens HOM05D001891 ORTHO05D004048 1.4e-15 87.8 158 38.0
Gohir.A03G163600 Gossypium hirsutum HOM05D001891 ORTHO05D004048 1.8e-15 87.4 159 36.5
Sp3g19830 Schrenkiella parvula HOM05D001891 ORTHO05D004048 1.8e-15 87.4 159 37.7
Thecc.02G162400 Theobroma cacao HOM05D001891 ORTHO05D004048 1.8e-15 87.4 159 36.5
A01p33120 Brassica napus HOM05D001891 ORTHO05D004048 2.4e-15 87.0 159 37.1
BraA01t03435Z Brassica rapa HOM05D001891 ORTHO05D004048 2.4e-15 87.0 159 37.1
MELO3C019235.2 Cucumis melo HOM05D001891 ORTHO05D004048 2.4e-15 87.0 159 37.1
Lalb_Chr03g0028901 Lupinus albus HOM05D001891 ORTHO05D004048 2.4e-15 87.0 160 36.2
RcHm_v2.0_Chr2g0160081 Rosa chinensis HOM05D001891 ORTHO05D004048 2.4e-15 87.0 159 35.8
BcaC09g49129 Brassica carinata HOM05D001891 ORTHO05D004048 3.1e-15 86.7 164 36.6
DCAR_012959 Daucus carota HOM05D001891 ORTHO05D004048 3.1e-15 86.7 159 35.2
AT3G21865 Arabidopsis thaliana HOM05D001891 ORTHO05D004048 4.1e-15 86.3 248 31.5
CANSAT64G0421 Cannabis sativa HOM05D001891 ORTHO05D004048 4.1e-15 86.3 160 36.9
Carub.0003s2193 Capsella rubella HOM05D001891 ORTHO05D004048 4.1e-15 86.3 159 37.1
CsaV3_2G035190 Cucumis sativus L. HOM05D001891 ORTHO05D004048 4.1e-15 86.3 159 35.8
Lalb_Chr01g0005561 Lupinus albus HOM05D001891 ORTHO05D004048 4.1e-15 86.3 248 30.2
Manes.12G078400 Manihot esculenta HOM05D001891 ORTHO05D004048 4.1e-15 86.3 159 37.1
Solyc12g005760.2 Solanum lycopersicum HOM05D001891 ORTHO05D004048 4.1e-15 86.3 160 37.5
TWI75G1691 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 4.1e-15 86.3 160 37.5
Actinidia12501 Actinidia chinensis HOM05D001891 ORTHO05D004048 5.3e-15 85.9 159 36.5
CiPaw.04G117900 Carya illinoinensis HOM05D001891 ORTHO05D004048 5.3e-15 85.9 159 36.5
TWI18G0897 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 5.3e-15 85.9 160 36.2
MSTRG.12288 Avicennia marina HOM05D001891 ORTHO05D004048 6.9e-15 85.5 159 37.7
C01p42350 Brassica napus HOM05D001891 ORTHO05D004048 6.9e-15 85.5 159 36.5
Duzib248G1135 Durio zibethinus HOM05D001891 ORTHO05D004048 6.9e-15 85.5 159 36.5
Thhalv10021287m.g Eutrema salsugineum HOM05D001891 ORTHO05D004048 6.9e-15 85.5 159 36.5
FvH4_6g43550 Fragaria vesca HOM05D001891 ORTHO05D004048 6.9e-15 85.5 159 35.2
FAN09G3447 Fragaria x ananassa HOM05D001891 ORTHO05D004048 6.9e-15 85.5 159 35.2
MD17G1092700 Malus domestica HOM05D001891 ORTHO05D004048 6.9e-15 85.5 159 35.8
Cpa.g.sc8.236 Carica papaya HOM05D001891 ORTHO05D004048 9.0e-15 85.1 128 39.8
Ca_27743_v3 Cicer arietinum L. HOM05D001891 ORTHO05D004048 9.0e-15 85.1 160 36.9
ClCG02G008440 Citrullus lanatus HOM05D001891 ORTHO05D004048 9.0e-15 85.1 159 35.2
PSO063G3135 Papaver somniferum HOM05D001891 ORTHO05D004048 9.0e-15 85.1 157 36.3
SalBow1G3276 Salvia bowleyana HOM05D001891 ORTHO05D004048 9.0e-15 85.1 159 35.8
Sopen12g001680 Solanum pennellii HOM05D001891 ORTHO05D004048 9.0e-15 85.1 160 36.9
Duzib132G0769 Durio zibethinus HOM05D001891 ORTHO05D004048 1.2e-14 84.7 159 37.1
Lj8A122T60 Lonicera japonica HOM05D001891 ORTHO05D004048 1.2e-14 84.7 159 35.2
Sed0022558 Sechium edule HOM05D001891 ORTHO05D004048 1.2e-14 84.7 159 35.8
Sc12g0002390 Simmondsia chinensis HOM05D001891 ORTHO05D004048 1.2e-14 84.7 159 35.8
THA.LOC104802537 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 1.2e-14 84.7 160 35.6
Zm00001eb069570 Zea mays HOM05D001891 ORTHO05D004048 1.2e-14 84.7 159 35.8
ATR0618G228 Amborella trichopoda HOM05D001891 ORTHO05D004048 1.5e-14 84.3 158 37.3
CSS0024189 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 1.5e-14 84.3 160 35.6
Gohir.A12G134800 Gossypium hirsutum HOM05D001891 ORTHO05D004048 1.5e-14 84.3 159 37.1
Gohir.D12G138400 Gossypium hirsutum HOM05D001891 ORTHO05D004048 1.5e-14 84.3 159 37.1
HanXRQChr10g0297471 Helianthus annuus HOM05D001891 ORTHO05D004048 1.5e-14 84.3 159 36.5
Oeu041959.1 Olea europaea HOM05D001891 ORTHO05D004048 1.5e-14 84.3 158 36.7
Actinidia30510 Actinidia chinensis HOM05D001891 ORTHO05D004048 2.0e-14 84.0 159 35.8
CAN.G80.19 Capsicum annuum HOM05D001891 ORTHO05D004048 2.0e-14 84.0 159 35.8
CDE04G1330 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 2.0e-14 84.0 158 35.4
Gorai.005G209300 Gossypium raimondii HOM05D001891 ORTHO05D004048 2.0e-14 84.0 160 36.9
MBI06_g15670_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 2.0e-14 84.0 158 36.1
Prupe.3G220500 Prunus persica HOM05D001891 ORTHO05D004048 2.0e-14 84.0 159 35.8
SGA_v2.0_scaffold49G18333 Striga asiatica HOM05D001891 ORTHO05D004048 2.0e-14 84.0 169 36.7
unitig_21.g20003 Utricularia gibba HOM05D001891 ORTHO05D004048 2.0e-14 84.0 163 35.0
Actinidia32079 Actinidia chinensis HOM05D001891 ORTHO05D004048 2.6e-14 83.6 159 35.8
Hma1.2p1_0613F.1_g189170 Hydrangea macrophylla HOM05D001891 ORTHO05D004048 2.6e-14 83.6 159 35.8
MD09G1105000 Malus domestica HOM05D001891 ORTHO05D004048 2.6e-14 83.6 159 34.6
Nn1g06995 Nelumbo nucifera HOM05D001891 ORTHO05D004048 2.6e-14 83.6 159 34.6
SEGI_12996 Sequoiadendron giganteum HOM05D001891 ORTHO05D004048 2.6e-14 83.6 159 37.1
THA.LOC104808497 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 2.6e-14 83.6 159 35.2
CSS0049956 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 3.4e-14 83.2 159 35.2
Lj3g0010899 Lotus japonicus HOM05D001891 ORTHO05D004048 3.4e-14 83.2 160 36.2
GSVIVG01030625001 Vitis vinifera HOM05D001891 ORTHO05D004048 3.4e-14 83.2 160 37.5
Actinidia00164 Actinidia chinensis HOM05D001891 ORTHO05D004048 4.5e-14 82.8 158 32.9
BcaC09g49125 Brassica carinata HOM05D001891 ORTHO05D004048 4.5e-14 82.8 159 37.1
BcaC09g49127 Brassica carinata HOM05D001891 ORTHO05D004048 4.5e-14 82.8 159 37.1
Medtr2g088850 Medicago truncatula HOM05D001891 ORTHO05D004048 4.5e-14 82.8 160 36.9
TPR.G4167 Trifolium pratense HOM05D001891 ORTHO05D004048 4.5e-14 82.8 160 36.2
arahy.Tifrunner.gnm1.ann1.6C63SS Arachis hypogaea HOM05D001891 ORTHO05D004048 5.8e-14 82.4 249 29.3
arahy.Tifrunner.gnm1.ann1.MDYX4P Arachis hypogaea HOM05D001891 ORTHO05D004048 5.8e-14 82.4 249 29.3
CiPaw.03G163000 Carya illinoinensis HOM05D001891 ORTHO05D004048 5.8e-14 82.4 263 28.5
Gorai.008G149900 Gossypium raimondii HOM05D001891 ORTHO05D004048 5.8e-14 82.4 159 36.5
HPP92_009055 Vanilla planifolia HOM05D001891 ORTHO05D004048 5.8e-14 82.4 157 33.1
Nitab4.5_0000631g0040 Nicotiana tabacum HOM05D001891 ORTHO05D004048 7.6e-14 82.0 128 37.5
Nitab4.5_0005894g0030 Nicotiana tabacum HOM05D001891 ORTHO05D009433 7.6e-14 82.0 160 36.2
Potri.017G038800 Populus trichocarpa HOM05D001891 ORTHO05D004048 7.6e-14 82.0 162 36.4
Zm00001eb431430 Zea mays HOM05D001891 ORTHO05D004048 7.6e-14 82.0 159 35.2
Aa31LG8G8420 Aethionema arabicum HOM05D001891 ORTHO05D004048 1.0e-13 81.6 160 36.2
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.0e-13 81.6 128 37.5
BcaC09g49122 Brassica carinata HOM05D001891 ORTHO05D004048 1.3e-13 81.3 160 36.2
BolC1t04190H Brassica oleracea HOM05D001891 ORTHO05D004048 1.3e-13 81.3 160 36.2
CARHR097820 Cardamine hirsuta HOM05D001891 ORTHO05D004048 1.3e-13 81.3 160 35.6
Eucgr.K00861 Eucalyptus grandis HOM05D001891 ORTHO05D004048 1.3e-13 81.3 165 34.5
HanXRQChr15g0479201 Helianthus annuus HOM05D001891 ORTHO05D004048 1.3e-13 81.3 158 35.4
Psat5g265320 Pisum sativum HOM05D001891 ORTHO05D004048 1.3e-13 81.3 160 35.0
Ah.01g014600 Amaranthus hybridus HOM05D001891 ORTHO05D004048 1.7e-13 80.9 159 35.8
CAN.G921.6 Capsicum annuum HOM05D001891 ORTHO05D004048 1.7e-13 80.9 128 38.3
Lsat_1_v5_gn_8_129400 Lactuca sativa HOM05D001891 ORTHO05D004048 1.7e-13 80.9 161 35.4
PSO541G4560 Papaver somniferum HOM05D001891 ORTHO05D004048 1.7e-13 80.9 159 35.2
Sed0020603 Sechium edule HOM05D001891 ORTHO05D004048 2.2e-13 80.5 158 34.2
TAR627G0099 Trochodendron aralioides HOM05D001891 ORTHO05D004048 2.2e-13 80.5 159 33.3
vmacro12228 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 2.2e-13 80.5 159 35.2
AUR62037141 Chenopodium quinoa HOM05D001891 ORTHO05D004048 2.9e-13 80.1 159 35.2
unitig_578.g16774 Utricularia gibba HOM05D001891 ORTHO05D004048 2.9e-13 80.1 163 34.4
PSO675G1171 Papaver somniferum HOM05D001891 ORTHO05D004048 3.8e-13 79.7 159 34.0
Sed0013568 Sechium edule HOM05D001891 ORTHO05D004048 3.8e-13 79.7 159 35.2
Solyc07g052600.3 Solanum lycopersicum HOM05D001891 ORTHO05D004048 3.8e-13 79.7 159 35.2
Sopen07g026210 Solanum pennellii HOM05D001891 ORTHO05D004048 3.8e-13 79.7 159 35.2
Migut.H01220 Erythranthe guttata HOM05D001891 ORTHO05D004048 5.0e-13 79.3 124 37.9
Rhsim04G0056600 Rhododendron simsii HOM05D001891 ORTHO05D004048 5.0e-13 79.3 250 29.2
SMO356G0403 Selaginella moellendorffii HOM05D001891 ORTHO05D004048 5.0e-13 79.3 165 34.5
SGA_v2.0_scaffold70G23420 Striga asiatica HOM05D001891 ORTHO05D004048 5.0e-13 79.3 173 34.7
MSTRG.14154 Avicennia marina HOM05D001891 ORTHO05D004048 6.5e-13 79.0 158 36.1
Nitab4.5_0001176g0130 Nicotiana tabacum HOM05D001891 ORTHO05D009433 6.5e-13 79.0 128 37.5
TAR629G3333 Trochodendron aralioides HOM05D001891 ORTHO05D004048 6.5e-13 79.0 159 32.7
Dinv02385 Davidia involucrata HOM05D001891 ORTHO05D004048 8.4e-13 78.6 124 40.3
ECA233G3416 Erigeron canadensis HOM05D000014 ORTHO05D000093 8.4e-13 78.6 158 34.2
Os04g0629000 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 8.4e-13 78.6 159 35.2
MELO3C018802.2 Cucumis melo HOM05D001891 ORTHO05D004048 1.1e-12 78.2 167 32.3
HanXRQChr17g0560941 Helianthus annuus HOM05D001891 ORTHO05D004048 1.1e-12 78.2 162 35.2
ClCG02G001770 Citrullus lanatus HOM05D001891 ORTHO05D004048 1.4e-12 77.8 160 33.1
SalBow7G2009 Salvia bowleyana HOM05D001891 ORTHO05D004048 1.4e-12 77.8 134 37.3
CDE07G1567 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 1.9e-12 77.4 158 32.9
Oeu011080.1 Olea europaea HOM05D001891 ORTHO05D004048 1.9e-12 77.4 124 38.7
Sabra17G0025800 Salix brachista HOM05D001891 ORTHO05D004048 3.2e-12 76.6 264 28.8
Os04g0672800 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 4.2e-12 76.3 154 35.1
Aqoxy4G02099 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 5.5e-12 75.9 159 32.1
Atru.chr6.3149 Acer truncatum HOM05D001891 ORTHO05D004048 7.1e-12 75.5 129 38.0
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 9.3e-12 75.1 115 40.0
Sabra07G0098300 Salix brachista HOM05D001891 ORTHO05D004048 9.3e-12 75.1 161 35.4
Peaxi162Scf00007g01230 Petunia axillaris HOM05D001891 ORTHO05D004048 1.6e-11 74.3 115 39.1
Potri.007G121600 Populus trichocarpa HOM05D001891 ORTHO05D004048 1.6e-11 74.3 161 34.8
HPP92_004139 Vanilla planifolia HOM05D001891 ORTHO05D004048 1.6e-11 74.3 161 34.2
AL3G36020 Arabidopsis lyrata HOM05D001891 ORTHO05D004048 2.1e-11 73.9 179 33.0
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.1e-11 73.9 115 38.3
Lj3A852T54 Lonicera japonica HOM05D001891 ORTHO05D004048 4.6e-11 72.8 115 40.0
Zm00001eb066610 Zea mays HOM05D001891 ORTHO05D004048 4.6e-11 72.8 272 29.4
TAR629G0018 Trochodendron aralioides HOM05D001891 ORTHO05D004048 6.1e-11 72.4 158 32.9
Lsat_1_v5_gn_4_69321 Lactuca sativa HOM05D001891 ORTHO05D004048 2.3e-10 70.5 151 36.4
arahy.Tifrunner.gnm1.ann1.NX9XDZ Arachis hypogaea HOM05D001891 ORTHO05D004048 1.5e-09 67.8 211 28.4
EL10Ac9g20654 Beta vulgaris HOM05D001891 ORTHO05D004048 1.5e-09 67.8 189 28.6
Nitab4.5_0006207g0030 Nicotiana tabacum HOM05D001891 ORTHO05D004048 1.5e-09 67.8 189 29.6
Aqoxy4G02095 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 5.7e-09 65.9 115 33.9
Aa31LG9G2160 Aethionema arabicum HOM05D001891 ORTHO05D004048 7.4e-09 65.5 162 33.3
arahy.Tifrunner.gnm1.ann1.CI1LQF Arachis hypogaea HOM05D001891 ORTHO05D004048 2.8e-08 63.5 190 29.5
Sabra08G0110200 Salix brachista HOM05D001891 ORTHO05D004048 7.7e-06 55.5 187 25.7


User provided reference genes

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