Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 0.0e+00 1365.1 730 100.0
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.6e-127 459.9 842 41.4
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 5.1e-73 280.0 461 39.0
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 3.3e-72 277.3 452 39.2
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 7.4e-72 276.2 456 39.7
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 2.8e-71 274.2 450 39.3
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 6.2e-71 273.1 453 38.6
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 1.1e-70 272.3 471 36.7
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.4e-70 271.9 476 35.9
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.4e-70 271.2 471 36.5
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 2.4e-70 271.2 487 36.8
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 3.1e-70 270.8 471 35.9
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 4.0e-70 270.4 460 36.1
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.2e-69 268.9 460 37.2
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.2e-69 268.9 473 37.0
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.2e-69 268.9 474 36.1
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.5e-69 268.5 471 36.1
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 1.5e-69 268.5 474 35.7
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 1.5e-69 268.5 469 36.5
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 2.0e-69 268.1 453 37.7
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.6e-69 267.7 471 36.7
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 3.4e-69 267.3 454 37.0
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 4.5e-69 266.9 452 37.8
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 7.6e-69 266.2 456 36.8
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 7.6e-69 266.2 471 35.9
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 7.6e-69 266.2 455 37.4
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 1.3e-68 265.4 450 37.1
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.7e-68 265.0 450 37.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.7e-68 265.0 453 36.4
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 2.2e-68 264.6 451 37.3
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 2.2e-68 264.6 455 37.1
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 2.9e-68 264.2 453 36.0
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 2.9e-68 264.2 456 37.5
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 3.8e-68 263.8 471 36.5
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 6.5e-68 263.1 471 36.7
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 6.5e-68 263.1 471 36.7
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.1e-67 262.3 453 36.4
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.1e-67 262.3 460 37.0
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 1.4e-67 261.9 471 38.2
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.4e-67 261.9 460 37.2
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.4e-67 261.9 435 38.4
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 1.9e-67 261.5 460 36.7
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 1.9e-67 261.5 474 35.9
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 2.5e-67 261.2 453 36.9
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 3.2e-67 260.8 475 36.0
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 3.2e-67 260.8 453 37.5
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 4.2e-67 260.4 471 34.6
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 4.2e-67 260.4 465 37.4
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 5.5e-67 260.0 454 36.1
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 5.5e-67 260.0 460 36.1
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 5.5e-67 260.0 460 36.1
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 5.5e-67 260.0 453 36.4
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 7.1e-67 259.6 470 36.2
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 7.1e-67 259.6 450 36.7
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 7.1e-67 259.6 458 36.9
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 7.1e-67 259.6 455 36.5
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 9.3e-67 259.2 475 35.8
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 1.6e-66 258.5 471 36.1
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 2.7e-66 257.7 610 32.3
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 2.7e-66 257.7 458 35.8
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 6.1e-66 256.5 458 36.9
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 7.9e-66 256.1 460 35.9
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 7.9e-66 256.1 457 37.6
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.0e-65 255.8 453 37.3
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 1.0e-65 255.8 471 35.9
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 3.0e-65 254.2 456 36.8
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 8.7e-65 252.7 471 35.5
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 5.7e-64 250.0 478 34.9
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 9.7e-64 249.2 455 36.5
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.2e-63 248.1 457 35.9
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 8.2e-63 246.1 457 35.2
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 8.2e-63 246.1 503 36.4
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 2.6e-61 241.1 451 35.0
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 5.9e-61 240.0 429 36.8
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 5.9e-61 240.0 454 35.7
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 7.7e-61 239.6 455 34.3
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 5.5e-59 233.4 504 32.5
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.2e-58 232.3 431 37.6
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 3.6e-58 230.7 447 34.7
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 5.1e-57 226.9 432 35.9
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.1e-56 225.7 434 35.0
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 3.3e-56 224.2 431 35.0
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.3e-55 222.2 540 30.7
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 2.8e-55 221.1 411 34.8
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 8.2e-55 219.5 362 35.6
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 9.1e-54 216.1 478 32.6
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 1.5e-53 215.3 383 36.8
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 6.5e-52 209.9 279 41.9
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 8.5e-52 209.5 484 34.9
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.5e-51 208.0 484 35.5
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 3.2e-51 207.6 440 33.6
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 6.1e-50 203.4 429 33.6
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 3.0e-49 201.1 495 30.9
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.5e-48 198.7 287 40.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 6.3e-47 193.4 512 31.6
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 1.0e-44 186.0 430 34.4
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.1e-43 182.6 399 33.1
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 2.5e-43 181.4 455 31.6
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.6e-42 178.7 226 42.0
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 1.1e-38 166.0 440 30.9
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.0e-36 157.1 388 32.2
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.4e-30 139.0 323 32.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.5e-24 119.0 126 42.1
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 3.4e-24 117.9 144 39.6
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 5.7e-24 117.1 137 46.7
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 9.8e-24 116.3 609 26.3
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 4.9e-23 114.0 477 28.3
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.1e-22 112.8 338 29.9
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 5.4e-22 110.5 111 45.0
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 1.5e-19 102.4 228 34.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.5e-19 101.7 451 25.1
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 1.2e-16 92.8 262 28.6
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 3.7e-15 87.8 275 29.5
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 1.1e-14 86.3 209 34.0


User provided reference genes

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