Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g278199 Chlamydomonas reinhardtii HOM05D006089 ORTHO05D007345 0.0e+00 1498.0 965 100.0
PRCOL_00006947 Prasinoderma coloniale HOM05D006089 ORTHO05D007345 2.4e-17 95.5 137 43.8
Cre12.g488350 Chlamydomonas reinhardtii HOM05D006089 ORTHO05D007345 5.3e-17 94.4 127 45.7
MCO09G176 Micromonas commoda HOM05D006089 ORTHO05D007345 1.7e-15 89.4 124 43.5
MCO11G542 Micromonas commoda HOM05D006089 ORTHO05D007345 1.9e-14 85.9 124 41.1
Cre16.g657800 Chlamydomonas reinhardtii HOM05D000433 ORTHO05D007345 1.0e-12 80.1 108 45.4
Mapoly0075s0089 Marchantia polymorpha HOM05D006089 ORTHO05D007345 6.7e-12 77.4 140 37.1
Os04g0550600 Oryza sativa ssp. japonica HOM05D006089 ORTHO05D007345 4.3e-11 74.7 157 35.0
Zm00001eb074640 Zea mays HOM05D006089 ORTHO05D007345 1.8e-09 69.3 232 30.6
SEGI_10037 Sequoiadendron giganteum HOM05D006089 ORTHO05D007345 4.0e-09 68.2 132 35.6
HPP92_022466 Vanilla planifolia HOM05D006089 ORTHO05D007345 5.3e-09 67.8 249 32.5
Cre09.g395362 Chlamydomonas reinhardtii HOM05D006089 ORTHO05D142893 1.2e-08 66.6 89 41.6
Pp3c6_21550 Physcomitrium patens HOM05D006089 ORTHO05D007345 1.5e-08 66.2 190 27.4
MCO11G754 Micromonas commoda HOM05D006089 ORTHO05D007345 2.0e-08 65.9 130 36.2
SMO165G0127 Selaginella moellendorffii HOM05D006089 ORTHO05D007345 2.6e-08 65.5 132 32.6
TWI14G0524 Tripterygium wilfordii HOM05D006089 ORTHO05D007345 4.5e-08 64.7 141 35.5
PRCOL_00001536 Prasinoderma coloniale HOM05D000433 ORTHO05D005978 7.6e-08 63.9 70 47.1
CANSAT80G2227 Cannabis sativa HOM05D000433 ORTHO05D000443 1.3e-07 63.2 196 24.5
ECA240G4128 Erigeron canadensis HOM05D006089 ORTHO05D007345 1.3e-07 63.2 135 33.3
Peaxi162Scf00377g00829 Petunia axillaris HOM05D006089 ORTHO05D007345 1.3e-07 63.2 135 34.8
CANSAT80G0704 Cannabis sativa HOM05D000433 ORTHO05D000443 1.7e-07 62.8 178 25.3
Sabra14G0041400 Salix brachista HOM05D006089 ORTHO05D007345 1.7e-07 62.8 141 31.9
Sabra09G0044600 Salix brachista HOM05D000433 ORTHO05D000443 2.9e-07 62.0 189 23.8
PGR044G0030 Punica granatum HOM05D000433 ORTHO05D000443 3.8e-07 61.6 186 25.3
PGSC0003DMG400026032 Solanum tuberosum HOM05D006089 ORTHO05D007345 4.9e-07 61.2 135 34.1
unitig_26.g8876 Utricularia gibba HOM05D006089 ORTHO05D007345 4.9e-07 61.2 205 30.7
CDE11G1089 Ceratophyllum demersum HOM05D006089 ORTHO05D007345 8.4e-07 60.5 167 30.5
CsaV3_6G008730 Cucumis sativus L. HOM05D006089 ORTHO05D007345 8.4e-07 60.5 182 30.2
Medtr8g037310 Medicago truncatula HOM05D000433 ORTHO05D000443 8.4e-07 60.5 225 23.1
RcHm_v2.0_Chr1g0342921 Rosa chinensis HOM05D006089 ORTHO05D007345 8.4e-07 60.5 158 31.6
HPP92_012181 Vanilla planifolia HOM05D000433 ORTHO05D000443 8.4e-07 60.5 211 29.4
Aa31LG1G26580 Aethionema arabicum HOM05D006089 ORTHO05D007345 1.1e-06 60.1 191 28.8
HanXRQChr13g0422761 Helianthus annuus HOM05D006089 ORTHO05D007345 1.1e-06 60.1 197 29.4
Aqoxy5G04142 Aquilegia oxysepala HOM05D006089 ORTHO05D007345 1.4e-06 59.7 134 32.8
ECA234G3403 Erigeron canadensis HOM05D000433 ORTHO05D000443 1.4e-06 59.7 161 26.7
MCO01G090 Micromonas commoda HOM05D000433 ORTHO05D007420 1.4e-06 59.7 171 26.9
PGR004G1132 Punica granatum HOM05D000433 ORTHO05D000443 1.4e-06 59.7 161 24.8
Sopen01g036390 Solanum pennellii HOM05D006089 ORTHO05D007345 1.4e-06 59.7 135 33.3
SGA_v2.0_scaffold51G18765 Striga asiatica HOM05D000433 ORTHO05D000443 1.4e-06 59.7 154 27.9
Ciclev10027500m.g Citrus clementina HOM05D006089 ORTHO05D007345 1.9e-06 59.3 134 30.6
Sc26g0001370 Simmondsia chinensis HOM05D006089 ORTHO05D007345 1.9e-06 59.3 135 33.3
Solyc01g087250.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 1.9e-06 59.3 175 24.0
Sopen01g034300 Solanum pennellii HOM05D000433 ORTHO05D000443 1.9e-06 59.3 175 24.0
Cc02_g24750 Coffea canephora HOM05D006089 ORTHO05D007345 2.4e-06 58.9 195 26.7
FAN03G3380 Fragaria x ananassa HOM05D000433 ORTHO05D000443 2.4e-06 58.9 189 25.9
Glyma.12G236700 Glycine max HOM05D000433 ORTHO05D000443 2.4e-06 58.9 152 26.3
Hma1.2p1_0184F.1_g081210 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 2.4e-06 58.9 164 27.4
RcHm_v2.0_Chr1g0348201 Rosa chinensis HOM05D006089 ORTHO05D007345 2.4e-06 58.9 220 29.5
unitig_748.g7394 Utricularia gibba HOM05D000433 ORTHO05D000443 2.4e-06 58.9 182 25.3
MELO3C022291.2 Cucumis melo HOM05D006089 ORTHO05D007345 3.2e-06 58.5 186 30.6
Lalb_Chr19g0132241 Lupinus albus HOM05D000433 ORTHO05D000443 3.2e-06 58.5 178 25.3
Mapoly0012s0198 Marchantia polymorpha HOM05D000433 ORTHO05D003991 3.2e-06 58.5 162 25.9
Nitab4.5_0003110g0040 Nicotiana tabacum HOM05D006089 ORTHO05D007345 3.2e-06 58.5 135 33.3
Actinidia22779 Actinidia chinensis HOM05D006089 ORTHO05D007345 4.2e-06 58.2 135 31.9
Actinidia22834 Actinidia chinensis HOM05D006089 ORTHO05D007345 4.2e-06 58.2 135 31.9
arahy.Tifrunner.gnm1.ann1.CX54DC Arachis hypogaea HOM05D000433 ORTHO05D000443 4.2e-06 58.2 187 25.1
arahy.Tifrunner.gnm1.ann1.GV0PL5 Arachis hypogaea HOM05D000433 ORTHO05D000443 4.2e-06 58.2 187 25.1
Medtr8g037315 Medicago truncatula HOM05D000433 ORTHO05D000443 4.2e-06 58.2 152 27.0
Nitab4.5_0004415g0050 Nicotiana tabacum HOM05D006089 ORTHO05D007345 4.2e-06 58.2 135 33.3
RcHm_v2.0_Chr1g0316181 Rosa chinensis HOM05D000433 ORTHO05D000443 4.2e-06 58.2 194 25.3
CANSAT80G0689 Cannabis sativa HOM05D000433 ORTHO05D000443 5.5e-06 57.8 177 23.7
AUR62007366 Chenopodium quinoa HOM05D000433 ORTHO05D000443 5.5e-06 57.8 146 34.2
Ca_23892_v3 Cicer arietinum L. HOM05D000433 ORTHO05D000443 5.5e-06 57.8 175 26.9
FvH4_7g01130 Fragaria vesca HOM05D000433 ORTHO05D000443 5.5e-06 57.8 187 26.2
FAN01G0836 Fragaria x ananassa HOM05D000433 ORTHO05D000443 5.5e-06 57.8 187 26.2
FAN01G0975 Fragaria x ananassa HOM05D000433 ORTHO05D000443 5.5e-06 57.8 187 26.2
FAN06G3200 Fragaria x ananassa HOM05D000433 ORTHO05D000443 5.5e-06 57.8 187 26.2
FAN10G2567 Fragaria x ananassa HOM05D000433 ORTHO05D000443 5.5e-06 57.8 187 26.2
Hma1.2p1_0681F.1_g202470 Hydrangea macrophylla HOM05D006089 ORTHO05D007345 5.5e-06 57.8 135 33.3
Lj3g0009657 Lotus japonicus HOM05D000433 ORTHO05D000443 5.5e-06 57.8 152 25.7
Pp3c21_12920 Physcomitrium patens HOM05D000433 ORTHO05D000443 5.5e-06 57.8 149 26.2
Psat4g148840 Pisum sativum HOM05D000433 ORTHO05D000443 5.5e-06 57.8 152 26.3
PRCOL_00004644 Prasinoderma coloniale HOM05D000433 ORTHO05D000443 5.5e-06 57.8 200 32.5
Thecc.01G387500 Theobroma cacao HOM05D006089 ORTHO05D007345 5.5e-06 57.8 135 33.3
Thecc.01G410200 Theobroma cacao HOM05D000433 ORTHO05D000443 5.5e-06 57.8 187 25.7
vmacro05208 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 5.5e-06 57.8 182 24.2
CiPaw.13G030000 Carya illinoinensis HOM05D006089 ORTHO05D007345 7.1e-06 57.4 132 32.6
Duzib138G0106 Durio zibethinus HOM05D006089 ORTHO05D007345 7.1e-06 57.4 134 32.1
Eucgr.E01594 Eucalyptus grandis HOM05D006089 ORTHO05D007345 7.1e-06 57.4 136 31.6
Medtr8g037275 Medicago truncatula HOM05D000433 ORTHO05D000443 7.1e-06 57.4 186 25.3
Pp3c22_6380 Physcomitrium patens HOM05D000433 ORTHO05D000443 7.1e-06 57.4 193 26.4
RcHm_v2.0_Chr1g0316311 Rosa chinensis HOM05D000433 ORTHO05D000443 7.1e-06 57.4 187 25.7
MSTRG.20579 Avicennia marina HOM05D000433 ORTHO05D000443 9.3e-06 57.0 175 23.4
Carub.0004s2759 Capsella rubella HOM05D006089 ORTHO05D007345 9.3e-06 57.0 165 29.7
TAR352G0004 Trochodendron aralioides HOM05D006089 ORTHO05D007345 9.3e-06 57.0 184 27.7
TAR375G0204 Trochodendron aralioides HOM05D006089 ORTHO05D007345 9.3e-06 57.0 184 27.7


User provided reference genes

Program Settings