Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 0.0e+00 1145.6 683 100.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.9e-86 323.9 690 34.9
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.0e-83 315.5 663 35.1
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.1e-80 303.9 661 34.2
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.1e-76 291.2 655 34.4
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 7.9e-76 289.3 663 34.2
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 2.8e-73 280.8 671 33.1
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 3.7e-73 280.4 662 32.6
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 4.8e-73 280.0 679 32.5
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.1e-72 278.9 687 32.3
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 5.3e-72 276.6 689 32.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 5.3e-72 276.6 671 32.6
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 9.0e-72 275.8 657 32.0
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.2e-71 275.4 671 32.6
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.5e-71 275.0 670 32.2
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-71 274.6 673 31.6
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 2.0e-71 274.6 673 31.6
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 3.4e-71 273.9 684 32.3
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 4.5e-71 273.5 678 32.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.0e-70 272.3 687 32.3
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.3e-70 271.9 673 31.5
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.3e-70 271.9 687 32.2
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.3e-70 271.9 678 31.7
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.2e-70 271.2 673 31.2
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.2e-70 271.2 673 31.2
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.2e-70 271.2 673 31.2
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.9e-70 270.8 689 32.1
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 2.9e-70 270.8 682 31.8
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 3.8e-70 270.4 671 32.5
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 4.9e-70 270.0 687 32.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 6.5e-70 269.6 670 31.9
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 6.5e-70 269.6 682 32.6
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 8.4e-70 269.2 689 31.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.1e-69 268.9 675 32.0
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.1e-69 268.9 679 31.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.1e-69 268.9 657 31.5
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.9e-69 268.1 680 32.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.9e-69 268.1 671 32.0
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.9e-69 268.1 683 32.2
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.5e-69 267.7 671 31.7
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.5e-69 267.7 681 32.2
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 3.2e-69 267.3 685 31.8
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 3.2e-69 267.3 690 31.7
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 4.2e-69 266.9 659 32.3
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 4.2e-69 266.9 682 31.8
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 7.1e-69 266.2 673 31.5
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.1e-69 266.2 689 32.2
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 7.1e-69 266.2 673 31.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 7.1e-69 266.2 669 31.5
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 9.3e-69 265.8 676 32.2
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 9.3e-69 265.8 681 31.4
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.2e-68 265.4 679 30.9
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-68 265.4 675 31.1
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.6e-68 265.0 689 32.1
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.5e-68 263.8 661 31.5
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 3.5e-68 263.8 684 31.1
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.5e-68 263.8 679 32.0
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 4.6e-68 263.5 682 31.2
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 6.0e-68 263.1 682 32.3
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 6.0e-68 263.1 671 31.4
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.9e-68 262.7 662 31.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.0e-67 262.3 668 31.7
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.3e-67 261.9 682 31.5
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.3e-67 261.9 663 31.8
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.8e-67 261.5 654 31.8
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.3e-67 261.2 675 31.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 3.9e-67 260.4 673 31.4
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.9e-67 260.4 675 31.7
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 3.9e-67 260.4 677 31.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.7e-67 259.6 677 31.5
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 6.7e-67 259.6 687 31.3
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 8.7e-67 259.2 672 31.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 8.7e-67 259.2 671 31.1
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 8.7e-67 259.2 687 31.6
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 8.7e-67 259.2 671 31.1
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.5e-66 258.5 708 31.1
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.9e-66 258.1 684 31.4
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.5e-66 257.7 687 31.7
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 3.3e-66 257.3 670 31.2
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 7.4e-66 256.1 681 31.4
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.7e-66 255.8 685 31.2
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 9.7e-66 255.8 676 31.5
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 9.7e-66 255.8 687 31.7
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.6e-65 255.0 682 30.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.2e-65 254.6 679 31.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.2e-65 254.6 658 31.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.8e-65 254.2 688 31.5
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.7e-65 253.8 676 31.4
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.8e-65 253.4 684 30.8
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.8e-65 253.4 687 31.4
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.3e-65 253.1 673 31.4
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 8.2e-65 252.7 685 31.4
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.8e-64 251.5 675 30.7
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.4e-64 251.1 677 30.4
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.4e-64 251.1 651 31.2
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 5.3e-64 250.0 667 30.6
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.9e-64 249.6 673 30.3
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 6.9e-64 249.6 673 30.2
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 9.0e-64 249.2 687 30.9
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.2e-63 248.8 447 37.1
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 5.9e-63 246.5 738 30.4
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.0e-62 245.7 701 30.2
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 8.5e-62 242.7 670 30.3
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 7.2e-61 239.6 645 31.3
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 9.4e-61 239.2 737 29.0
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 3.6e-60 237.3 445 35.7
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.6e-60 236.9 539 33.0
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 7.9e-60 236.1 650 30.8
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 7.9e-60 236.1 630 31.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 7.9e-60 236.1 661 31.5
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 2.3e-59 234.6 644 31.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 3.9e-59 233.8 743 29.2
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.0e-58 231.5 669 29.3
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 9.7e-58 229.2 634 32.0
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 8.2e-57 226.1 636 31.3
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 9.1e-56 222.6 384 37.2
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.0e-54 219.2 673 29.4
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.0e-54 216.9 683 28.8
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 5.0e-54 216.9 676 30.2
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.1e-53 215.7 657 29.1
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 9.4e-53 212.6 341 38.1
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.6e-52 211.8 746 28.6
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 6.1e-52 209.9 445 34.4
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.0e-50 204.9 684 28.7
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 9.7e-50 202.6 267 42.7
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.0e-46 192.6 592 29.6
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.7e-44 184.5 257 41.6
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 5.7e-42 176.8 561 30.1
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 4.7e-36 157.1 690 29.3
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.6e-34 151.4 594 28.3
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 5.7e-34 150.2 530 29.1
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.5e-30 136.7 186 43.0
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 2.8e-25 121.3 151 45.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 6.3e-25 120.2 155 45.2
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.4e-24 118.2 151 44.4
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 1.0e-22 112.8 513 25.0
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 8.6e-22 109.8 227 30.8
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 8.0e-20 103.2 423 26.5
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.5e-10 72.4 102 44.1
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.3e-09 69.3 282 24.8
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 4.9e-09 67.4 341 24.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.1e-08 66.2 100 37.0
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 9.2e-08 63.2 108 36.1
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-07 62.8 110 35.5
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 6.6e-06 57.0 341 24.3


User provided reference genes

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