Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g242950 Chlamydomonas reinhardtii HOM05D003997 ORTHO05D002698 1.0e-186 656.8 378 100.0
Oeu020171.1 Olea europaea HOM05D003997 ORTHO05D002698 4.0e-13 80.1 117 38.5
PSO675G1782 Papaver somniferum HOM05D003997 ORTHO05D002698 6.9e-13 79.3 117 37.6
PSO732G0769 Papaver somniferum HOM05D003997 ORTHO05D002698 6.9e-13 79.3 117 37.6
Cfa020087 Carpinus fangiana HOM05D003997 ORTHO05D002698 9.0e-13 79.0 117 38.5
Ciclev10013709m.g Citrus clementina HOM05D003997 ORTHO05D002698 9.0e-13 79.0 117 38.5
AagrBONN_evm.TU.Sc2ySwM_228.3244 Anthoceros agrestis HOM05D003997 ORTHO05D002698 1.2e-12 78.6 142 35.9
Cpa.g.sc17.105 Carica papaya HOM05D003997 ORTHO05D002698 1.2e-12 78.6 137 35.8
Eucgr.H00426 Eucalyptus grandis HOM05D003997 ORTHO05D002698 1.5e-12 78.2 117 37.6
HanXRQChr17g0562561 Helianthus annuus HOM05D003997 ORTHO05D002698 1.5e-12 78.2 117 36.8
TWI53G0181 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 1.5e-12 78.2 117 37.6
Lsat_1_v5_gn_4_40160 Lactuca sativa HOM05D003997 ORTHO05D002698 2.0e-12 77.8 117 36.8
Os01g0616500 Oryza sativa ssp. japonica HOM05D003997 ORTHO05D002698 2.0e-12 77.8 113 38.1
Sed0019356 Sechium edule HOM05D003997 ORTHO05D002698 2.0e-12 77.8 117 37.6
TWI74G0953 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 2.0e-12 77.8 117 36.8
arahy.Tifrunner.gnm1.ann1.2ECS7R Arachis hypogaea HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 37.6
arahy.Tifrunner.gnm1.ann1.4LVT1K Arachis hypogaea HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 37.6
arahy.Tifrunner.gnm1.ann1.7B1PRD Arachis hypogaea HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 37.6
arahy.Tifrunner.gnm1.ann1.RN4U32 Arachis hypogaea HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 37.6
arahy.Tifrunner.gnm1.ann1.W16VAI Arachis hypogaea HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 37.6
arahy.Tifrunner.gnm1.ann1.ZAYD4R Arachis hypogaea HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 37.6
CSS0008111 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 35.9
CSS0023244 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 35.9
Migut.L01852 Erythranthe guttata HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 38.5
Migut.O00931 Erythranthe guttata HOM05D003997 ORTHO05D002698 2.6e-12 77.4 117 38.5
arahy.Tifrunner.gnm1.ann1.4C6UH4 Arachis hypogaea HOM05D003997 ORTHO05D002698 3.4e-12 77.0 117 37.6
Duzib128G1254 Durio zibethinus HOM05D003997 ORTHO05D002698 3.4e-12 77.0 117 37.6
QL03p055008 Quercus lobata HOM05D003997 ORTHO05D002698 3.4e-12 77.0 117 37.6
QL07p027111 Quercus lobata HOM05D003997 ORTHO05D002698 3.4e-12 77.0 117 37.6
SHI07013 Sapria himalayana HOM05D003997 ORTHO05D002698 4.4e-12 76.6 112 40.2
Zm00001eb095190 Zea mays HOM05D003997 ORTHO05D002698 4.4e-12 76.6 113 36.3
arahy.Tifrunner.gnm1.ann1.RXW997 Arachis hypogaea HOM05D003997 ORTHO05D002698 5.8e-12 76.3 110 39.1
ECA234G3695 Erigeron canadensis HOM05D003997 ORTHO05D002698 5.8e-12 76.3 117 35.9
Lj3A736G17 Lonicera japonica HOM05D003997 ORTHO05D002698 5.8e-12 76.3 117 35.9
RcHm_v2.0_Chr7g0223381 Rosa chinensis HOM05D003997 ORTHO05D002698 5.8e-12 76.3 105 39.0
Thecc.05G108200 Theobroma cacao HOM05D003997 ORTHO05D002698 5.8e-12 76.3 117 36.8
Atru.chr8.1304 Acer truncatum HOM05D003997 ORTHO05D002698 9.9e-12 75.5 117 36.8
Aqoxy1G01867 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 9.9e-12 75.5 117 36.8
Aqoxy4G00923 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 9.9e-12 75.5 117 36.8
CiPaw.08G072600 Carya illinoinensis HOM05D003997 ORTHO05D002698 9.9e-12 75.5 117 36.8
CiPaw.15G185300 Carya illinoinensis HOM05D003997 ORTHO05D002698 9.9e-12 75.5 117 36.8
Cc06_g06830 Coffea canephora HOM05D003997 ORTHO05D002698 9.9e-12 75.5 117 36.8
Actinidia37765 Actinidia chinensis HOM05D003997 ORTHO05D002698 1.3e-11 75.1 117 35.9
THA.LOC109116862 Tarenaya hassleriana HOM05D003997 ORTHO05D002698 1.3e-11 75.1 117 35.9
TAR623G1175 Trochodendron aralioides HOM05D003997 ORTHO05D002698 1.3e-11 75.1 117 35.0
AT1G52370 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 1.7e-11 74.7 117 35.0
MELO3C004760.2 Cucumis melo HOM05D003997 ORTHO05D002698 1.7e-11 74.7 117 35.9
ATR0730G052 Amborella trichopoda HOM05D003997 ORTHO05D002698 2.2e-11 74.3 117 37.6
AT4G28360 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 2.2e-11 74.3 117 35.0
Gohir.A01G200200 Gossypium hirsutum HOM05D003997 ORTHO05D002698 2.2e-11 74.3 117 36.8
Gohir.D01G190300 Gossypium hirsutum HOM05D003997 ORTHO05D002698 2.2e-11 74.3 117 36.8
Gorai.002G234000 Gossypium raimondii HOM05D003997 ORTHO05D002698 2.2e-11 74.3 117 36.8
Nn2g14387 Nelumbo nucifera HOM05D003997 ORTHO05D002698 2.2e-11 74.3 117 35.9
HPP92_017694 Vanilla planifolia HOM05D003997 ORTHO05D002698 2.2e-11 74.3 113 34.5
Psat6g101760 Pisum sativum HOM05D003997 ORTHO05D002698 2.9e-11 73.9 117 36.8
RcHm_v2.0_Chr3g0476631 Rosa chinensis HOM05D003997 ORTHO05D002698 2.9e-11 73.9 105 38.1
Sabra16G0068400 Salix brachista HOM05D003997 ORTHO05D002698 2.9e-11 73.9 105 37.1
GSVIVG01022501001 Vitis vinifera HOM05D003997 ORTHO05D002698 2.9e-11 73.9 117 35.0
MSTRG.10419 Avicennia marina HOM05D003997 ORTHO05D002698 3.8e-11 73.6 117 35.9
CANSAT35G1644 Cannabis sativa HOM05D003997 ORTHO05D002698 3.8e-11 73.6 117 35.0
Ca_12342_v3 Cicer arietinum L. HOM05D003997 ORTHO05D002698 3.8e-11 73.6 117 35.9
CsaV3_1G014590 Cucumis sativus L. HOM05D003997 ORTHO05D002698 3.8e-11 73.6 117 35.0
AL1G60620 Arabidopsis lyrata HOM05D003997 ORTHO05D002698 4.9e-11 73.2 117 34.2
Carub.0001s4137 Capsella rubella HOM05D003997 ORTHO05D002698 4.9e-11 73.2 117 34.2
Hma1.2p1_2082F.1_g313570 Hydrangea macrophylla HOM05D003997 ORTHO05D002698 4.9e-11 73.2 117 35.0
MBI19_g30302_MAGBIO Magnolia biondii HOM05D003997 ORTHO05D002698 4.9e-11 73.2 112 34.8
Potri.016G067100 Populus trichocarpa HOM05D003997 ORTHO05D002698 4.9e-11 73.2 117 35.0
Carub.0007s1240 Capsella rubella HOM05D003997 ORTHO05D002698 6.4e-11 72.8 117 34.2
Manes.08G035900 Manihot esculenta HOM05D003997 ORTHO05D002698 6.4e-11 72.8 117 35.9
Phvul.008G070600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 6.4e-11 72.8 117 35.9
SalBow5G1795 Salvia bowleyana HOM05D003997 ORTHO05D002698 6.4e-11 72.8 117 34.2
ClCG01G012560 Citrullus lanatus HOM05D003997 ORTHO05D002698 1.1e-10 72.0 117 34.2
SMO228G0153 Selaginella moellendorffii HOM05D003997 ORTHO05D002698 1.1e-10 72.0 105 38.1
SGA_v2.0_scaffold392G50675 Striga asiatica HOM05D003997 ORTHO05D002698 1.1e-10 72.0 117 35.0
unitig_8.g3554 Utricularia gibba HOM05D003997 ORTHO05D002698 1.1e-10 72.0 117 34.2
Lalb_Chr16g0386841 Lupinus albus HOM05D003997 ORTHO05D002698 1.4e-10 71.6 117 35.0
Peaxi162Scf00002g03712 Petunia axillaris HOM05D003997 ORTHO05D002698 1.4e-10 71.6 117 35.0
MD14G1042400 Malus domestica HOM05D003997 ORTHO05D002698 2.4e-10 70.9 105 35.2
Prupe.7G091500 Prunus persica HOM05D003997 ORTHO05D002698 2.4e-10 70.9 105 35.2
vmacro07504 Vaccinium macrocarpon HOM05D003997 ORTHO05D002698 2.4e-10 70.9 117 34.2
Nitab4.5_0000082g0420 Nicotiana tabacum HOM05D003997 ORTHO05D002698 3.2e-10 70.5 117 33.3
Nitab4.5_0009392g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 3.2e-10 70.5 117 33.3
Nitab4.5_0014391g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 3.2e-10 70.5 117 33.3
Nitab4.5_0021549g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 3.2e-10 70.5 117 33.3
COL.COLO4_29520 Corchorus olitorius HOM05D003997 ORTHO05D002698 5.4e-10 69.7 117 34.2
SEGI_26891 Sequoiadendron giganteum HOM05D003997 ORTHO05D002698 5.4e-10 69.7 105 35.2
DCAR_013448 Daucus carota HOM05D003997 ORTHO05D002698 7.1e-10 69.3 140 30.7
VMungo1383G3620 Vigna mungo HOM05D003997 ORTHO05D002698 7.1e-10 69.3 121 33.9
Glyma.09G264400 Glycine max HOM05D003997 ORTHO05D002698 9.3e-10 68.9 122 34.4
Gorai.006G147800 Gossypium raimondii HOM05D003997 ORTHO05D002698 9.3e-10 68.9 116 34.5
Medtr1g040020 Medicago truncatula HOM05D003997 ORTHO05D002698 9.3e-10 68.9 117 34.2
Aa31LG11G1160 Aethionema arabicum HOM05D003997 ORTHO05D002698 1.2e-09 68.6 117 33.3
Dinv25067 Davidia involucrata HOM05D003997 ORTHO05D002698 1.2e-09 68.6 117 33.3
Glyma.18G227500 Glycine max HOM05D003997 ORTHO05D002698 1.2e-09 68.6 117 35.0
Lalb_Chr05g0221411 Lupinus albus HOM05D003997 ORTHO05D002698 1.2e-09 68.6 117 34.2
Phvul.008G070900 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.2e-09 68.6 117 34.2
Hund20962 Selenicereus undatus HOM05D003997 ORTHO05D002698 1.2e-09 68.6 107 32.7
Sc06g0010610 Simmondsia chinensis HOM05D003997 ORTHO05D002698 1.2e-09 68.6 117 34.2
Lj2g0021502 Lotus japonicus HOM05D003997 ORTHO05D002698 2.1e-09 67.8 119 36.1
TPR.G30221 Trifolium pratense HOM05D003997 ORTHO05D002698 2.1e-09 67.8 110 34.5
BcaB07g29840 Brassica carinata HOM05D003997 ORTHO05D002698 3.5e-09 67.0 117 31.6
Rhsim03G0061700 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.5e-09 67.0 119 33.6
Solyc04g017680.3 Solanum lycopersicum HOM05D003997 ORTHO05D002698 3.5e-09 67.0 116 33.6
Sopen04g008760 Solanum pennellii HOM05D003997 ORTHO05D002698 3.5e-09 67.0 116 33.6
FvH4_6g20730 Fragaria vesca HOM05D003997 ORTHO05D002698 4.6e-09 66.6 90 38.9
FAN02G0475 Fragaria x ananassa HOM05D003997 ORTHO05D002698 4.6e-09 66.6 90 38.9
FAN05G3201 Fragaria x ananassa HOM05D003997 ORTHO05D002698 4.6e-09 66.6 90 38.9
FAN14G5955 Fragaria x ananassa HOM05D003997 ORTHO05D002698 4.6e-09 66.6 90 38.9
Gohir.A09G132800 Gossypium hirsutum HOM05D003997 ORTHO05D002698 4.6e-09 66.6 117 33.3
BolC3t18692H Brassica oleracea HOM05D003997 ORTHO05D002698 6.0e-09 66.2 117 32.5
Ah.15g098860 Amaranthus hybridus HOM05D003997 ORTHO05D002698 7.8e-09 65.9 90 38.9
Pp3c8_16210 Physcomitrium patens HOM05D003997 ORTHO05D002698 7.8e-09 65.9 117 32.5
EL10Ac7g16269 Beta vulgaris HOM05D003997 ORTHO05D002698 1.0e-08 65.5 117 32.5
BcaC01g02477 Brassica carinata HOM05D003997 ORTHO05D002698 1.0e-08 65.5 137 30.7
C03p64380 Brassica napus HOM05D003997 ORTHO05D002698 1.0e-08 65.5 137 30.7
Thhalv10003962m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 1.3e-08 65.1 117 31.6
MCO07G289 Micromonas commoda HOM05D003997 ORTHO05D002698 1.3e-08 65.1 105 32.4
Rhsim03G0061200 Rhododendron simsii HOM05D003997 ORTHO05D002698 2.3e-08 64.3 119 33.6
BcaB02g09651 Brassica carinata HOM05D003997 ORTHO05D002698 3.0e-08 63.9 117 30.8
BraA06t25868Z Brassica rapa HOM05D003997 ORTHO05D002698 3.0e-08 63.9 117 30.8
A02p42340 Brassica napus HOM05D003997 ORTHO05D002698 3.9e-08 63.5 117 30.8
C02p62220 Brassica napus HOM05D003997 ORTHO05D002698 3.9e-08 63.5 117 30.8
BraA02t09164Z Brassica rapa HOM05D003997 ORTHO05D002698 3.9e-08 63.5 117 30.8
RhsimUnG0113000 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.9e-08 63.5 119 33.6
AUR62015091 Chenopodium quinoa HOM05D003997 ORTHO05D002698 5.1e-08 63.2 90 35.6
AUR62017549 Chenopodium quinoa HOM05D003997 ORTHO05D002698 5.1e-08 63.2 90 35.6
BcaC03g18154 Brassica carinata HOM05D003997 ORTHO05D002698 6.6e-08 62.8 105 31.4
BcaC03g18159 Brassica carinata HOM05D003997 ORTHO05D002698 6.6e-08 62.8 105 31.4
Sp2g25660 Schrenkiella parvula HOM05D003997 ORTHO05D002698 6.6e-08 62.8 117 30.8
RcHm_v2.0_Chr4g0386011 Rosa chinensis HOM05D003997 ORTHO05D002698 1.1e-07 62.0 117 36.8
PRCOL_00001286 Prasinoderma coloniale HOM05D003997 ORTHO05D002698 1.5e-07 61.6 156 31.4
BolC2t12279H Brassica oleracea HOM05D003997 ORTHO05D002698 1.9e-07 61.2 105 31.4
MD03G1130200 Malus domestica HOM05D003997 ORTHO05D002698 1.9e-07 61.2 133 34.6
MD06G1011100 Malus domestica HOM05D003997 ORTHO05D002698 2.5e-07 60.8 106 35.8
FvH4_4g00560 Fragaria vesca HOM05D003997 ORTHO05D002698 3.3e-07 60.5 108 36.1
FAN12G0168 Fragaria x ananassa HOM05D003997 ORTHO05D002698 3.3e-07 60.5 108 36.1
Phvul.008G071600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 3.3e-07 60.5 80 38.8
Prupe.7G027600 Prunus persica HOM05D003997 ORTHO05D002698 1.6e-06 58.2 93 35.5
FAN12G3167 Fragaria x ananassa HOM05D003997 ORTHO05D002698 3.6e-06 57.0 99 36.4
CARHR236070 Cardamine hirsuta HOM05D003997 ORTHO05D002698 8.1e-06 55.8 117 28.2


User provided reference genes

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