Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g227900 Chlamydomonas reinhardtii HOM05D014335 ORTHO05D015846 4.5e-275 950.7 490 100.0
PRCOL_00003624 Prasinoderma coloniale HOM05D014335 ORTHO05D015846 7.4e-76 288.9 585 35.7
MCO11G300 Micromonas commoda HOM05D014335 ORTHO05D015846 4.3e-68 263.1 355 45.6
AagrBONN_evm.TU.Sc2ySwM_228.3797 Anthoceros agrestis HOM05D014335 ORTHO05D015846 7.9e-54 215.7 353 38.8
CBR_g48437 Chara braunii HOM05D014335 ORTHO05D015846 7.0e-50 202.6 219 53.9
Mapoly0008s0073 Marchantia polymorpha HOM05D014335 ORTHO05D015846 6.7e-45 186.0 353 37.1
SMO169G0025 Selaginella moellendorffii HOM05D014335 ORTHO05D015846 2.0e-33 147.9 146 48.6
CBR_g48441 Chara braunii HOM05D014335 ORTHO05D015846 5.5e-31 139.8 124 51.6
Pp3c9_22280 Physcomitrium patens HOM05D014335 ORTHO05D015846 6.4e-19 99.8 271 27.3
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 1.2e-12 79.0 171 29.8
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 1.2e-12 79.0 171 29.8
SMO367G1087 Selaginella moellendorffii HOM05D003335 ORTHO05D003853 4.1e-10 70.5 170 28.8
COL.COLO4_30358 Corchorus olitorius HOM05D001315 ORTHO05D001618 7.0e-10 69.7 179 25.1
FAN20G0971 Fragaria x ananassa HOM05D000836 ORTHO05D000709 6.0e-09 66.6 178 26.4
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 1.0e-08 65.9 113 32.7
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 1.0e-08 65.9 113 32.7
Thecc.09G117400 Theobroma cacao HOM05D000836 ORTHO05D000709 1.0e-08 65.9 175 26.3
FAN24G1350 Fragaria x ananassa HOM05D000836 ORTHO05D000709 1.7e-08 65.1 177 25.4
CBR_g51007 Chara braunii HOM05D004669 ORTHO05D005767 2.3e-08 64.7 168 26.8
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 3.0e-08 64.3 128 29.7
Lj5g0025520 Lotus japonicus HOM05D000836 ORTHO05D000709 3.0e-08 64.3 175 26.3
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 3.9e-08 63.9 132 32.6
BcaC07g41105 Brassica carinata HOM05D004736 ORTHO05D006424 5.0e-08 63.5 180 25.6
unitig_736.g22486 Utricularia gibba HOM05D003335 ORTHO05D003853 5.0e-08 63.5 167 30.5
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 6.6e-08 63.2 113 32.7
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 8.6e-08 62.8 170 27.1
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 8.6e-08 62.8 113 30.1
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 8.6e-08 62.8 113 32.7
BcaC07g41100 Brassica carinata HOM05D004736 ORTHO05D006424 1.1e-07 62.4 180 24.4
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 1.1e-07 62.4 183 25.1
MD15G1103400 Malus domestica HOM05D000836 ORTHO05D000709 1.1e-07 62.4 175 26.3
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 1.1e-07 62.4 113 31.9
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 1.1e-07 62.4 113 33.6
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 1.1e-07 62.4 113 31.0
TWI12G0929 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 1.1e-07 62.4 166 27.1
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 1.5e-07 62.0 113 31.9
THA.LOC104803821 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 1.5e-07 62.0 166 25.9
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 1.9e-07 61.6 113 31.9
A09p57830 Brassica napus HOM05D004736 ORTHO05D006424 1.9e-07 61.6 180 25.0
CiPaw.02G151700 Carya illinoinensis HOM05D001315 ORTHO05D001618 1.9e-07 61.6 115 31.3
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 1.9e-07 61.6 113 33.6
COL.COLO4_34958 Corchorus olitorius HOM05D000836 ORTHO05D000709 1.9e-07 61.6 175 25.1
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.9e-07 61.6 113 31.9
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 2.5e-07 61.2 113 31.0
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 2.5e-07 61.2 113 30.1
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 2.5e-07 61.2 113 32.7
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 2.5e-07 61.2 113 31.0
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 2.5e-07 61.2 167 26.3
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 2.5e-07 61.2 113 31.0
SMO169G0287 Selaginella moellendorffii HOM05D014335 ORTHO05D015846 3.3e-07 60.8 55 52.7
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 3.3e-07 60.8 118 31.4
DCAR_025494 Daucus carota HOM05D002634 ORTHO05D003100 4.3e-07 60.5 115 28.7
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 4.3e-07 60.5 113 31.0
Os01g0177100 Oryza sativa ssp. japonica HOM05D000836 ORTHO05D000709 4.3e-07 60.5 178 28.1
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 5.6e-07 60.1 113 31.9
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 5.6e-07 60.1 113 31.0
CDE02G2483 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 5.6e-07 60.1 171 28.1
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 5.6e-07 60.1 177 27.7
Glyma.10G133700 Glycine max HOM05D003335 ORTHO05D003853 5.6e-07 60.1 165 28.5
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 5.6e-07 60.1 172 28.5
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 5.6e-07 60.1 113 31.9
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 5.6e-07 60.1 167 28.1
THA.LOC104819886 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 5.6e-07 60.1 170 25.3
Haze_25664 Corylus avellana HOM05D000836 ORTHO05D000709 7.3e-07 59.7 174 23.0
Glyma.20G084500 Glycine max HOM05D003335 ORTHO05D003853 7.3e-07 59.7 165 28.5
Pp3c6_19920 Physcomitrium patens HOM05D003335 ORTHO05D003853 7.3e-07 59.7 166 28.3
C08p41070 Brassica napus HOM05D004736 ORTHO05D006424 9.5e-07 59.3 180 24.4
BolC8t51671H Brassica oleracea HOM05D004736 ORTHO05D006424 9.5e-07 59.3 180 24.4
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 9.5e-07 59.3 113 31.9
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 9.5e-07 59.3 113 31.9
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 9.5e-07 59.3 113 31.9
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 9.5e-07 59.3 113 30.1
Manes.03G067700 Manihot esculenta HOM05D000836 ORTHO05D000709 9.5e-07 59.3 171 25.7
TPR.G24009 Trifolium pratense HOM05D003335 ORTHO05D003853 9.5e-07 59.3 165 27.9
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 9.5e-07 59.3 159 27.0
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 1.2e-06 58.9 113 31.9
Phvul.007G270500 Phaseolus vulgaris HOM05D003335 ORTHO05D003853 1.2e-06 58.9 165 27.9
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 1.2e-06 58.9 113 31.9
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 1.2e-06 58.9 113 31.0
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 1.2e-06 58.9 113 31.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.2e-06 58.9 167 27.5
VMungo0720G1182 Vigna mungo HOM05D003335 ORTHO05D003853 1.2e-06 58.9 165 27.9
Zm00001eb065280 Zea mays HOM05D000836 ORTHO05D000709 1.2e-06 58.9 174 24.7
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 1.2e-06 58.9 171 28.7
Actinidia20838 Actinidia chinensis HOM05D003335 ORTHO05D003853 1.6e-06 58.5 164 27.4
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 1.6e-06 58.5 176 26.7
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.6e-06 58.5 113 30.1
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.6e-06 58.5 113 30.1
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 1.6e-06 58.5 113 29.2
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 1.6e-06 58.5 118 29.7
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 2.1e-06 58.2 172 27.3
CDE05G0005 Ceratophyllum demersum HOM05D001315 ORTHO05D001618 2.1e-06 58.2 156 28.2
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 2.1e-06 58.2 169 26.0
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 2.1e-06 58.2 163 28.8
Mapoly0157s0022 Marchantia polymorpha HOM05D003335 ORTHO05D003853 2.1e-06 58.2 164 29.3
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 2.1e-06 58.2 115 32.2
vmacro16948 Vaccinium macrocarpon HOM05D001315 ORTHO05D001618 2.1e-06 58.2 162 27.2
Zm00001eb258660 Zea mays HOM05D000836 ORTHO05D000709 2.1e-06 58.2 166 26.5
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 2.8e-06 57.8 113 31.0
Aa31LG4G11740 Aethionema arabicum HOM05D000836 ORTHO05D000709 2.8e-06 57.8 170 24.1
Manes.16G063800 Manihot esculenta HOM05D000836 ORTHO05D000709 2.8e-06 57.8 171 24.6
Ciclev10004724m.g Citrus clementina HOM05D003335 ORTHO05D003853 3.6e-06 57.4 164 27.4
COL.COLO4_15958 Corchorus olitorius HOM05D003335 ORTHO05D003853 3.6e-06 57.4 163 27.0
Duzib168G2271 Durio zibethinus HOM05D000836 ORTHO05D000709 3.6e-06 57.4 175 23.4
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 3.6e-06 57.4 165 27.9
Prupe.7G235500 Prunus persica HOM05D000836 ORTHO05D000709 3.6e-06 57.4 175 25.1
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.6e-06 57.4 219 24.2
THA.LOC104801067 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 3.6e-06 57.4 171 27.5
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 3.6e-06 57.4 113 27.4
CiPaw.03G236700 Carya illinoinensis HOM05D000836 ORTHO05D000709 4.7e-06 57.0 175 25.1
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 4.7e-06 57.0 113 30.1
Lj4g0001690 Lotus japonicus HOM05D000836 ORTHO05D000709 4.7e-06 57.0 173 24.9
Medtr4g088625 Medicago truncatula HOM05D000836 ORTHO05D000709 4.7e-06 57.0 169 24.3
Oeu059397.1 Olea europaea HOM05D003335 ORTHO05D003853 4.7e-06 57.0 170 28.2
QL02p086475 Quercus lobata HOM05D000836 ORTHO05D000709 4.7e-06 57.0 174 23.6
QL12p031494 Quercus lobata HOM05D000836 ORTHO05D000709 4.7e-06 57.0 175 24.0
Sc08g0007020 Simmondsia chinensis HOM05D000836 ORTHO05D000709 4.7e-06 57.0 170 26.5
Atru.chr4.1923 Acer truncatum HOM05D003335 ORTHO05D003853 6.2e-06 56.6 167 25.7
Aa31LG8G3130 Aethionema arabicum HOM05D001315 ORTHO05D001618 6.2e-06 56.6 158 27.2
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 6.2e-06 56.6 172 26.7
Cpa.g.sc2868.1 Carica papaya HOM05D001315 ORTHO05D001618 6.2e-06 56.6 158 27.2
Cfa002058 Carpinus fangiana HOM05D001315 ORTHO05D001618 6.2e-06 56.6 158 27.2
Haze_16445 Corylus avellana HOM05D001315 ORTHO05D001618 6.2e-06 56.6 158 27.2
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 6.2e-06 56.6 178 24.7
Thecc.06G085200 Theobroma cacao HOM05D001315 ORTHO05D001618 6.2e-06 56.6 158 27.2
AL1G60610 Arabidopsis lyrata HOM05D001315 ORTHO05D001618 8.1e-06 56.2 158 27.2
MSTRG.4169 Avicennia marina HOM05D003335 ORTHO05D003853 8.1e-06 56.2 165 28.5
Duzib235G0424 Durio zibethinus HOM05D001315 ORTHO05D001618 8.1e-06 56.2 158 27.8
Lj6g0012574 Lotus japonicus HOM05D003335 ORTHO05D003853 8.1e-06 56.2 165 27.9
SMO169G0150 Selaginella moellendorffii HOM05D047906 ORTHO05D015846 8.1e-06 56.2 141 31.2
THA.LOC104816006 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 8.1e-06 56.2 166 28.3


User provided reference genes

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