Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 0.0e+00 1611.3 877 100.0
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 1.4e-104 385.2 683 36.0
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 3.1e-101 374.0 628 36.1
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 3.1e-101 374.0 627 35.7
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 4.1e-101 373.6 628 35.8
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 4.1e-101 373.6 628 35.8
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 4.1e-101 373.6 626 36.3
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 4.1e-101 373.6 627 35.9
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 7.0e-101 372.9 628 35.2
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 7.0e-101 372.9 628 36.1
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 9.1e-101 372.5 628 35.8
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 1.6e-100 371.7 626 35.8
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 2.0e-100 371.3 626 35.5
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 2.0e-100 371.3 627 35.9
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 3.5e-100 370.5 627 36.2
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 4.5e-100 370.2 626 35.1
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 4.5e-100 370.2 627 36.4
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 7.7e-100 369.4 641 35.1
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 7.7e-100 369.4 627 36.4
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 1.0e-99 369.0 626 35.3
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.0e-99 369.0 701 34.7
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.0e-99 369.0 626 35.8
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 1.0e-99 369.0 627 35.6
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.7e-99 368.2 632 35.6
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 2.2e-99 367.9 627 35.1
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 2.9e-99 367.5 627 35.7
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 2.9e-99 367.5 627 35.2
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 3.8e-99 367.1 628 35.7
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 3.8e-99 367.1 626 34.8
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 6.5e-99 366.3 628 35.7
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 6.5e-99 366.3 627 35.4
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 8.5e-99 365.9 690 34.1
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 8.5e-99 365.9 627 35.1
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 8.5e-99 365.9 627 35.4
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 1.1e-98 365.5 627 35.4
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 1.1e-98 365.5 627 34.9
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 1.9e-98 364.8 685 34.9
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 2.5e-98 364.4 627 35.6
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 3.2e-98 364.0 627 35.2
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 3.2e-98 364.0 628 34.7
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 5.5e-98 363.2 627 35.7
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 5.5e-98 363.2 628 36.0
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 5.5e-98 363.2 633 36.2
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 7.2e-98 362.8 627 35.1
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 7.2e-98 362.8 627 34.9
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 1.6e-97 361.7 628 35.4
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 1.6e-97 361.7 627 34.8
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 1.6e-97 361.7 627 34.8
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 2.1e-97 361.3 627 35.2
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 2.7e-97 360.9 641 35.1
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 3.6e-97 360.5 629 33.9
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.7e-97 360.1 665 34.1
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 4.7e-97 360.1 627 35.1
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 6.1e-97 359.8 627 35.4
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 6.1e-97 359.8 631 34.5
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 6.1e-97 359.8 627 35.2
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 8.0e-97 359.4 627 35.9
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 1.0e-96 359.0 627 34.3
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 1.0e-96 359.0 622 35.7
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 1.4e-96 358.6 626 34.2
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 1.4e-96 358.6 627 35.1
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.8e-96 358.2 627 35.2
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 6.7e-96 356.3 627 34.8
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 8.8e-96 355.9 626 34.7
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.1e-95 355.5 626 34.3
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.5e-95 355.1 656 34.0
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.0e-95 354.8 626 34.2
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 9.7e-95 352.4 633 34.8
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 2.2e-94 351.3 624 34.9
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 1.1e-93 349.0 380 46.3
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 7.0e-93 346.3 651 34.1
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 7.0e-93 346.3 627 34.4
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 5.9e-92 343.2 594 36.4
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 7.7e-92 342.8 380 45.8
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 3.8e-91 340.5 391 45.3
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 5.0e-91 340.1 380 45.3
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 1.5e-90 338.6 624 33.3
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 3.2e-90 337.4 391 45.3
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 1.8e-88 331.6 380 43.7
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 5.2e-88 330.1 716 32.4
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 3.4e-87 327.4 648 33.0
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 9.8e-87 325.9 389 44.0
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 2.2e-86 324.7 706 30.9
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 1.7e-83 315.1 595 33.8
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 2.5e-82 311.2 643 32.2
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 7.2e-82 309.7 365 43.0
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 6.8e-80 303.1 579 33.0
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 2.0e-79 301.6 374 42.8
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 4.9e-78 297.0 631 31.4
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 1.1e-77 295.8 595 32.6
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 1.0e-75 289.3 392 39.5
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 2.3e-67 261.5 623 29.5
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 1.2e-65 255.8 301 43.2
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 4.7e-65 253.8 303 42.6
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 3.1e-64 251.1 301 42.9
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 1.3e-62 245.7 414 35.5
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 3.7e-62 244.2 311 42.4
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.0e-59 236.1 301 40.5
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 3.6e-57 227.6 461 34.1
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 4.7e-57 227.3 341 38.4
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 8.9e-56 223.0 441 33.8
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 2.1e-52 211.8 431 32.9
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.7e-51 208.8 622 27.5
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 8.1e-49 199.9 256 43.0
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.0e-47 195.3 374 34.2
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.9e-45 188.7 240 40.8
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 2.7e-44 184.9 247 39.7
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 8.1e-41 173.3 294 33.7
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 5.6e-34 150.6 130 54.6
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 3.3e-26 124.8 325 30.2
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.2e-23 116.3 91 58.2
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.4e-15 88.2 69 58.0
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 5.5e-13 80.9 98 42.9
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.0e-11 75.1 168 31.5
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 6.7e-11 73.9 134 32.8
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 6.3e-09 67.4 100 42.0
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.8e-08 65.9 57 52.6
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 2.6e-07 62.0 116 31.9
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 2.6e-07 62.0 116 28.4
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.5e-07 61.2 41 65.9


User provided reference genes

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