Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 0.0e+00 1744.6 1386 100.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.3e-12 78.6 153 35.3
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.3e-12 78.6 153 35.3
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 4.3e-12 78.6 302 25.5
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 2.8e-11 75.9 141 32.6
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 4.7e-11 75.1 313 25.2
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 4.7e-11 75.1 305 25.2
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 6.2e-11 74.7 305 25.2
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.4e-10 73.6 141 31.9
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.4e-10 72.8 144 33.3
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 5.2e-10 71.6 143 32.9
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 6.8e-10 71.2 162 32.1
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 6.8e-10 71.2 162 32.1
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 1.2e-09 70.5 144 33.3
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.5e-09 70.1 143 32.9
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.6e-09 69.3 230 26.1
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 2.6e-09 69.3 142 31.7
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 3.4e-09 68.9 143 32.2
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 3.4e-09 68.9 172 33.1
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 7.6e-09 67.8 141 32.6
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 9.9e-09 67.4 140 31.4
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 9.9e-09 67.4 142 32.4
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 9.9e-09 67.4 141 32.6
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.3e-08 67.0 140 31.4
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.7e-08 66.6 142 32.4
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 1.7e-08 66.6 140 34.3
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 2.2e-08 66.2 143 31.5
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 2.2e-08 66.2 141 32.6
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.2e-08 66.2 327 22.9
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.2e-08 66.2 327 22.9
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.9e-08 65.9 108 35.2
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.9e-08 65.9 141 32.6
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.8e-08 65.5 326 24.5
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 3.8e-08 65.5 222 26.6
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 3.8e-08 65.5 141 29.1
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 4.9e-08 65.1 141 31.9
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 4.9e-08 65.1 141 31.9
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.9e-08 65.1 162 30.2
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 6.4e-08 64.7 142 31.7
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 8.4e-08 64.3 143 30.1
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 8.4e-08 64.3 143 30.1
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 8.4e-08 64.3 141 32.6
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 8.4e-08 64.3 143 31.5
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 8.4e-08 64.3 141 33.3
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 8.4e-08 64.3 302 23.8
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.1e-07 63.9 141 32.6
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.4e-07 63.5 153 28.8
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.4e-07 63.5 141 32.6
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.4e-07 63.5 156 29.5
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.9e-07 63.2 141 30.5
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.9e-07 63.2 142 31.0
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.9e-07 63.2 141 31.2
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.4e-07 62.8 141 32.6
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 2.4e-07 62.8 143 30.8
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.4e-07 62.8 130 33.1
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 2.4e-07 62.8 231 25.1
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.2e-07 62.4 141 31.2
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 3.2e-07 62.4 157 31.2
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 3.2e-07 62.4 144 30.6
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 3.2e-07 62.4 141 31.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 7.1e-07 61.2 152 28.9
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 7.1e-07 61.2 117 34.2
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 9.3e-07 60.8 76 40.8
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 9.3e-07 60.8 140 32.1
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 9.3e-07 60.8 320 24.1
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.2e-06 60.5 304 24.3
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.2e-06 60.5 141 31.9
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.2e-06 60.5 241 24.9
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.2e-06 60.5 241 24.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.6e-06 60.1 155 28.4
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.6e-06 60.1 116 34.5
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.6e-06 60.1 116 34.5
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.1e-06 59.7 167 28.7
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.7e-06 59.3 145 31.0
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.7e-06 59.3 72 41.7
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 3.5e-06 58.9 116 32.8
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 3.5e-06 58.9 116 33.6
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 3.5e-06 58.9 116 33.6
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 3.5e-06 58.9 116 33.6
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 3.5e-06 58.9 154 28.6
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 3.5e-06 58.9 154 28.6
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 4.6e-06 58.5 84 39.3
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 4.6e-06 58.5 233 25.8
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 4.6e-06 58.5 143 30.1
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 4.6e-06 58.5 140 30.0
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 7.8e-06 57.8 73 41.1


User provided reference genes

Program Settings