Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 0.0e+00 1822.0 1040 100.0
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 2.5e-142 510.8 994 35.9
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 8.2e-141 505.8 986 35.9
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 1.1e-140 505.4 982 35.5
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 4.0e-140 503.4 984 36.6
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 9.0e-140 502.3 990 35.8
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 1.2e-139 501.9 984 36.6
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 2.6e-139 500.7 990 38.2
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 3.4e-139 500.4 986 36.1
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 4.5e-139 500.0 978 35.9
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 4.5e-139 500.0 980 36.2
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 1.0e-138 498.8 995 36.4
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 1.7e-138 498.0 979 36.3
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 1.7e-138 498.0 989 36.1
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 3.8e-138 496.9 989 35.5
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 3.8e-138 496.9 978 36.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 4.9e-138 496.5 983 36.3
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.9e-138 496.5 1013 36.8
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 6.5e-138 496.1 994 34.9
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 8.4e-138 495.7 1003 35.8
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 1.4e-137 495.0 978 35.6
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.9e-137 494.6 981 36.0
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 1.9e-137 494.6 979 35.4
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 5.5e-137 493.0 990 35.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 7.1e-137 492.7 990 35.6
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 7.1e-137 492.7 978 36.0
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 9.3e-137 492.3 993 35.8
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 9.3e-137 492.3 985 37.8
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.2e-136 491.9 984 36.2
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 1.6e-136 491.5 978 35.9
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 1.6e-136 491.5 1024 35.4
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 2.7e-136 490.7 987 33.4
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 2.7e-136 490.7 991 36.2
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.7e-136 490.7 1011 36.6
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 3.5e-136 490.3 990 34.9
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 4.6e-136 490.0 991 36.4
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 6.0e-136 489.6 980 35.9
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 7.9e-136 489.2 986 36.2
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 7.9e-136 489.2 978 38.3
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 1.0e-135 488.8 988 35.1
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.0e-135 488.8 980 35.1
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.0e-135 488.8 990 35.8
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 1.3e-135 488.4 979 35.0
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 1.3e-135 488.4 978 35.9
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 3.0e-135 487.3 978 36.2
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 3.9e-135 486.9 980 35.0
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 8.7e-135 485.7 995 34.5
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 8.7e-135 485.7 978 36.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 1.1e-134 485.3 982 35.7
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.5e-134 485.0 995 35.7
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 3.3e-134 483.8 984 35.5
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 3.3e-134 483.8 987 35.7
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.3e-134 483.4 953 35.5
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 5.7e-134 483.0 994 35.2
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 7.4e-134 482.6 996 35.1
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 2.2e-133 481.1 997 35.1
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.8e-133 480.7 981 35.2
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 2.8e-133 480.7 987 36.5
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 3.7e-133 480.3 983 34.0
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 6.3e-133 479.6 978 37.6
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 6.3e-133 479.6 994 37.1
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 6.3e-133 479.6 992 35.6
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 1.1e-132 478.8 984 37.3
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 1.4e-132 478.4 1004 34.8
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 3.1e-132 477.2 994 38.2
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 1.5e-131 474.9 953 38.2
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 1.5e-131 474.9 990 38.4
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 2.0e-131 474.6 982 35.6
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 2.6e-131 474.2 978 35.2
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 5.9e-131 473.0 980 36.5
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 1.7e-130 471.5 957 35.4
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 2.2e-130 471.1 984 38.0
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 2.2e-130 471.1 987 36.3
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 2.9e-130 470.7 988 34.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 3.8e-130 470.3 990 36.3
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 5.0e-130 469.9 954 35.1
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 8.5e-130 469.2 979 36.1
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 1.4e-129 468.4 1024 34.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 2.5e-129 467.6 979 36.6
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 2.5e-129 467.6 979 34.8
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 2.5e-129 467.6 1006 33.5
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 7.2e-129 466.1 979 34.9
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 9.4e-129 465.7 990 36.0
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 1.2e-128 465.3 1026 36.9
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 3.6e-128 463.8 989 35.1
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 4.6e-128 463.4 989 34.9
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 6.1e-128 463.0 985 35.0
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 7.9e-128 462.6 983 34.8
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 2.3e-127 461.1 991 37.9
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 6.7e-127 459.5 980 34.5
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 1.5e-126 458.4 1016 37.1
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 1.5e-126 458.4 987 36.1
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 2.5e-126 457.6 946 34.4
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.3e-125 455.3 986 35.1
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 4.1e-124 450.3 978 34.5
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 3.8e-122 443.7 987 34.8
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 1.9e-121 441.4 987 33.7
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 3.0e-119 434.1 995 34.6
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 3.0e-119 434.1 994 34.0
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 1.1e-118 432.2 980 37.6
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 3.3e-118 430.6 981 37.5
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 3.3e-118 430.6 1001 38.6
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 9.7e-118 429.1 1105 37.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 1.7e-117 428.3 837 36.8
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.8e-117 427.6 1004 33.7
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.4e-116 425.2 948 32.8
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 1.4e-116 425.2 1028 31.4
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 4.1e-116 423.7 1004 33.5
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 4.1e-116 423.7 995 33.3
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 7.0e-116 422.9 995 36.0
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 9.1e-116 422.5 1004 33.5
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.0e-115 421.4 932 34.0
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 5.9e-115 419.9 954 34.3
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 1.7e-114 418.3 491 43.6
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 2.2e-114 417.9 815 35.6
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.9e-113 414.8 491 44.4
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 3.2e-113 414.1 495 43.8
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 4.2e-113 413.7 549 41.2
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 9.4e-113 412.5 1075 31.1
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 9.4e-113 412.5 1005 32.3
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.4e-111 408.7 497 44.3
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 3.3e-110 404.1 824 36.9
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 4.4e-110 403.7 985 33.4
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 9.7e-110 402.5 491 43.2
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 8.5e-106 389.4 831 36.0
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.2e-102 379.0 497 41.9
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.2e-96 359.0 819 34.1
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.7e-74 285.4 1019 28.0
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.6e-72 278.9 983 28.2
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 6.6e-66 256.9 664 33.3
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.6e-64 251.1 319 41.7
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.2e-63 247.3 374 38.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 5.2e-63 247.3 367 39.8
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 8.9e-63 246.5 346 39.0
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-61 242.7 648 33.2
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.3e-57 226.9 346 36.7
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.5e-54 219.2 350 36.0
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 9.3e-44 183.3 295 36.6
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.8e-38 164.1 624 27.9
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 5.4e-36 157.5 252 36.5
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.4e-28 132.9 149 56.4
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.5e-25 122.1 556 29.5
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 4.5e-22 111.3 124 58.9
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.5e-17 95.5 327 26.0
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 2.6e-14 85.5 215 30.2
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.6e-11 76.3 156 32.1
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.0e-10 73.6 100 39.0
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.1e-07 63.5 70 42.9


User provided reference genes

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