Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 0.0e+00 1489.6 815 100.0
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 2.2e-61 241.5 618 30.7
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.4e-58 232.3 615 30.2
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.8e-58 231.9 612 29.9
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.8e-58 231.9 612 29.9
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 2.2e-56 224.9 651 28.7
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.4e-55 222.2 608 28.5
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 5.4e-55 220.3 611 29.8
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 2.7e-54 218.0 624 29.0
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 2.3e-53 214.9 633 28.6
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 5.0e-53 213.8 638 27.6
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 8.6e-53 213.0 615 29.4
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 3.3e-52 211.1 591 28.3
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 3.3e-52 211.1 634 28.4
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 4.3e-52 210.7 634 27.8
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 5.6e-52 210.3 622 27.8
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.6e-51 208.8 634 28.1
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.1e-51 208.4 611 29.3
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.8e-51 208.0 595 28.2
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 3.6e-51 207.6 615 28.1
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 4.7e-51 207.2 623 28.7
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 6.1e-51 206.8 639 28.0
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 2.3e-50 204.9 634 28.7
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 2.3e-50 204.9 603 27.5
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 2.3e-50 204.9 595 29.2
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 3.0e-50 204.5 622 27.7
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 6.8e-50 203.4 615 27.3
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 6.8e-50 203.4 617 27.6
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 8.9e-50 203.0 611 27.7
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.2e-49 202.6 615 27.3
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.5e-49 202.2 592 27.9
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 1.5e-49 202.2 624 28.0
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.5e-49 202.2 626 28.6
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 2.0e-49 201.8 634 28.1
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.6e-49 201.4 619 28.6
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 2.6e-49 201.4 616 28.4
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 2.6e-49 201.4 651 28.7
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.3e-48 199.1 634 26.8
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 4.9e-48 197.2 639 28.5
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 4.9e-48 197.2 631 27.9
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 4.9e-48 197.2 615 27.5
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 6.4e-48 196.8 602 28.4
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 8.3e-48 196.4 636 26.9
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.1e-47 196.1 639 26.9
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 2.4e-47 194.9 682 26.5
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 2.4e-47 194.9 625 28.0
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 3.2e-47 194.5 636 26.4
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 7.0e-47 193.4 641 26.4
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 1.2e-46 192.6 627 25.7
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 1.6e-46 192.2 591 26.6
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 2.7e-46 191.4 617 27.1
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 2.7e-46 191.4 688 26.2
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 3.5e-46 191.0 593 27.5
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 4.6e-46 190.7 637 27.3
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 4.6e-46 190.7 615 26.0
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 5.9e-46 190.3 644 28.6
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 5.9e-46 190.3 592 27.5
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 5.9e-46 190.3 650 26.5
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.0e-45 189.5 617 26.6
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-45 189.1 678 25.4
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.3e-45 189.1 635 25.8
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 1.3e-45 189.1 756 26.9
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-45 188.7 593 26.6
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 1.7e-45 188.7 617 26.6
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.7e-45 188.7 624 25.6
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 1.7e-45 188.7 644 28.7
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.3e-45 188.3 620 27.3
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.3e-45 188.3 593 26.8
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 2.3e-45 188.3 593 27.3
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 3.9e-45 187.6 637 27.9
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 5.0e-45 187.2 676 25.9
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 5.0e-45 187.2 614 26.2
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 8.6e-45 186.4 597 26.8
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 1.5e-44 185.7 594 28.5
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 2.5e-44 184.9 597 26.8
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.3e-44 184.5 621 27.1
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 3.3e-44 184.5 601 26.6
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 3.3e-44 184.5 639 27.5
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 3.3e-44 184.5 656 25.9
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 7.3e-44 183.3 632 26.6
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 9.5e-44 183.0 659 26.4
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 9.5e-44 183.0 631 27.6
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 1.6e-43 182.2 606 26.9
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.1e-43 181.8 613 26.9
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 3.6e-43 181.0 643 27.5
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.6e-43 181.0 621 26.9
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 6.2e-43 180.3 532 28.2
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 8.0e-43 179.9 566 27.2
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.4e-42 179.1 585 26.5
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 2.3e-42 178.3 630 27.6
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 2.3e-42 178.3 626 26.2
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 5.2e-42 177.2 610 26.4
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 5.2e-42 177.2 613 26.4
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.8e-42 176.8 620 26.9
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 8.9e-42 176.4 615 24.9
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 8.9e-42 176.4 595 26.6
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.2e-41 176.0 602 26.4
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 2.0e-41 175.3 588 26.4
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 5.8e-41 173.7 561 26.7
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 1.7e-40 172.2 627 26.3
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 2.9e-40 171.4 618 26.5
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 4.9e-40 170.6 688 26.3
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 6.4e-40 170.2 610 26.1
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 6.4e-40 170.2 609 25.8
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 6.4e-40 170.2 618 24.8
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 6.4e-40 170.2 657 26.3
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 8.3e-40 169.9 605 25.8
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 1.1e-39 169.5 605 26.3
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.4e-39 169.1 605 27.1
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.2e-39 167.9 636 25.6
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 5.4e-39 167.2 598 25.6
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 5.4e-39 167.2 628 25.5
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 5.4e-39 167.2 614 25.9
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 2.7e-38 164.9 599 27.7
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.0e-37 162.9 637 26.1
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.3e-37 161.8 449 29.0
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 3.3e-36 157.9 598 24.9
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 9.5e-36 156.4 507 26.8
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 9.5e-36 156.4 611 26.5
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.2e-35 156.0 605 26.0
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 8.1e-35 153.3 568 25.2
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.1e-34 151.4 600 24.8
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 4.0e-34 151.0 638 23.7
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 8.9e-34 149.8 659 24.6
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 8.9e-34 149.8 621 24.5
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 1.3e-32 146.0 575 25.7
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.2e-32 145.2 440 26.8
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.7e-32 144.4 643 23.8
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.9e-32 144.1 638 23.4
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 8.3e-32 143.3 638 23.4
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.1e-31 142.9 577 24.8
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.9e-31 142.1 622 26.0
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.9e-31 142.1 639 23.3
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 9.2e-31 139.8 638 23.7
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 1.6e-30 139.0 593 23.6
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 6.0e-30 137.1 287 30.3
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 6.0e-30 137.1 287 30.3
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 1.7e-29 135.6 621 25.4
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 1.7e-29 135.6 626 25.7
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 5.1e-29 134.0 482 26.8
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 6.6e-29 133.7 409 26.9
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.9e-28 132.1 609 24.5
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 7.3e-28 130.2 609 23.5
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 6.8e-26 123.6 420 27.1
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 2.0e-25 122.1 328 29.6
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 2.6e-25 121.7 475 25.1
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 3.4e-25 121.3 311 31.8
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 3.7e-24 117.9 482 24.5
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 5.4e-23 114.0 305 28.9
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 1.2e-22 112.8 309 29.1
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.3e-20 104.4 334 27.5
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 5.6e-20 104.0 316 27.8
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 7.3e-20 103.6 352 26.4
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-18 99.4 239 31.8
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.4e-18 98.6 264 28.8
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 1.9e-15 89.0 223 29.1
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-14 86.3 360 26.4
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 2.1e-14 85.5 370 23.5
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 4.6e-14 84.3 228 30.7
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.3e-13 82.0 399 23.1
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.9e-12 79.0 223 28.7
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.4e-10 72.8 609 18.7
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 5.8e-09 67.4 373 23.3
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 6.4e-08 63.9 181 25.4
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 2.4e-07 62.0 78 37.2
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 4.2e-07 61.2 210 24.3


User provided reference genes

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