Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 3.1e-232 808.1 416 100.0
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 1.7e-126 456.8 369 63.1
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.5e-125 453.8 369 62.3
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 2.5e-125 453.0 369 61.5
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 3.3e-125 452.6 369 62.3
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 3.3e-125 452.6 369 62.6
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 4.3e-125 452.2 378 61.6
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 9.5e-125 451.1 378 60.3
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.2e-124 450.7 369 61.8
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.2e-124 450.7 369 61.8
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 1.6e-124 450.3 366 62.8
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.6e-124 450.3 369 62.1
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.6e-124 450.3 369 62.3
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 2.1e-124 449.9 369 61.5
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 2.8e-124 449.5 369 61.5
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.8e-124 449.5 368 62.2
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 2.8e-124 449.5 368 62.5
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 3.6e-124 449.1 368 62.0
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 4.7e-124 448.7 369 61.8
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 6.2e-124 448.4 368 61.1
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 8.1e-124 448.0 370 61.4
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 1.1e-123 447.6 368 61.7
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.1e-123 447.6 368 61.7
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 1.4e-123 447.2 369 61.5
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.4e-123 447.2 369 61.5
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 1.4e-123 447.2 368 61.1
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 2.3e-123 446.4 374 60.2
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 4.0e-123 445.7 360 62.5
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 4.0e-123 445.7 355 63.4
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 5.2e-123 445.3 368 60.6
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 5.2e-123 445.3 355 63.7
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 5.2e-123 445.3 369 61.5
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 6.8e-123 444.9 369 61.5
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 6.8e-123 444.9 369 61.2
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 6.8e-123 444.9 370 60.8
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 8.9e-123 444.5 368 60.9
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 8.9e-123 444.5 368 61.4
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 8.9e-123 444.5 369 61.0
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 1.2e-122 444.1 355 62.5
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 1.2e-122 444.1 370 60.3
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 1.2e-122 444.1 369 61.0
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 1.5e-122 443.7 370 61.1
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 2.0e-122 443.4 370 60.8
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 2.0e-122 443.4 369 60.4
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 2.0e-122 443.4 368 61.1
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 2.6e-122 443.0 369 61.0
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 3.4e-122 442.6 369 61.2
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 4.4e-122 442.2 369 61.0
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 5.8e-122 441.8 370 59.7
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 5.8e-122 441.8 369 61.0
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 5.8e-122 441.8 369 61.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 7.6e-122 441.4 369 61.8
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 7.6e-122 441.4 369 60.7
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 7.6e-122 441.4 368 61.1
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 7.6e-122 441.4 369 59.3
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 9.9e-122 441.0 369 61.2
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 9.9e-122 441.0 370 60.0
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 1.3e-121 440.7 369 61.0
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 1.3e-121 440.7 369 59.9
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 1.7e-121 440.3 370 60.5
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 1.7e-121 440.3 368 60.6
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 1.7e-121 440.3 369 60.7
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 1.7e-121 440.3 366 61.2
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 1.7e-121 440.3 368 60.6
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 2.2e-121 439.9 370 60.5
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 2.9e-121 439.5 369 60.4
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 2.9e-121 439.5 377 60.2
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.9e-121 439.5 370 60.3
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 2.9e-121 439.5 369 60.4
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 3.8e-121 439.1 369 59.6
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 3.8e-121 439.1 368 60.9
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 4.9e-121 438.7 369 59.6
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 4.9e-121 438.7 370 60.3
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 4.9e-121 438.7 370 60.3
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 4.9e-121 438.7 369 60.7
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 4.9e-121 438.7 370 59.7
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 6.4e-121 438.3 370 59.7
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 6.4e-121 438.3 370 60.3
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 6.4e-121 438.3 370 60.3
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 6.4e-121 438.3 369 61.0
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 8.4e-121 438.0 369 59.9
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 1.1e-120 437.6 370 60.0
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 1.1e-120 437.6 370 60.8
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 1.4e-120 437.2 370 60.0
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.9e-120 436.8 374 58.6
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 2.4e-120 436.4 369 60.4
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 2.4e-120 436.4 369 59.9
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 3.2e-120 436.0 369 60.7
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 3.2e-120 436.0 368 60.6
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 3.2e-120 436.0 368 60.3
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 3.2e-120 436.0 368 60.3
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 3.2e-120 436.0 368 60.3
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 5.4e-120 435.3 370 60.5
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 7.1e-120 434.9 370 60.0
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 7.1e-120 434.9 370 60.0
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 9.2e-120 434.5 370 59.7
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 9.2e-120 434.5 408 56.4
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 1.2e-119 434.1 369 59.9
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 1.6e-119 433.7 369 59.9
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.6e-119 433.7 366 60.1
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.6e-119 433.7 359 60.4
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 3.5e-119 432.6 368 59.2
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 5.6e-117 425.2 393 56.7
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 5.6e-117 425.2 369 58.3
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 6.2e-116 421.8 390 56.7
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 8.1e-116 421.4 356 59.8
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 1.2e-114 417.5 419 53.5
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 3.4e-114 416.0 353 58.9
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 4.4e-114 415.6 339 63.7
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 2.2e-113 413.3 395 55.2
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.1e-112 411.0 411 50.9
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 2.4e-112 409.8 380 54.7
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 5.1e-110 402.1 347 59.1
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 5.1e-110 402.1 347 59.1
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 1.5e-109 400.6 395 53.2
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 4.0e-107 392.5 354 56.8
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 1.6e-100 370.5 441 47.8
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 1.8e-99 367.1 369 53.7
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 2.4e-99 366.7 347 53.9
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.4e-98 362.8 387 50.9
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 8.7e-94 348.2 371 50.7
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 1.9e-93 347.1 313 56.9
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 1.9e-93 347.1 368 51.4
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 7.6e-90 335.1 329 54.4
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 2.9e-81 306.6 365 45.8
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.9e-80 303.9 358 48.3
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 7.2e-72 275.4 251 57.8
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.6e-71 274.2 252 56.7
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 1.2e-63 248.1 298 45.0
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 2.1e-63 247.3 491 35.0
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 8.8e-62 241.9 342 40.6
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.8e-60 236.9 186 62.9
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 1.0e-41 175.3 172 54.1
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.7e-41 174.5 360 34.4
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.9e-40 171.0 124 68.5
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 4.0e-38 163.3 168 53.6
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 5.6e-32 142.9 210 40.0
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 4.4e-29 133.3 95 66.3
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 3.6e-23 113.6 68 76.5
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 5.2e-22 109.8 68 73.5
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 1.1e-19 102.1 81 60.5
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.9e-19 101.3 280 28.9
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 4.6e-18 96.7 94 55.3
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 3.0e-17 94.0 74 60.8
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 5.6e-16 89.7 55 74.5
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 4.9e-12 76.6 66 56.1
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 9.5e-08 62.4 398 25.1
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 9.5e-08 62.4 120 35.0
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 9.5e-08 62.4 120 35.0
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 2.1e-07 61.2 50 52.0
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 8.1e-07 59.3 364 25.5
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 1.4e-06 58.5 215 24.7
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 1.8e-06 58.2 403 24.1
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.8e-06 58.2 390 24.4
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 4.0e-06 57.0 387 23.8
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 4.0e-06 57.0 362 24.3
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 6.8e-06 56.2 45 62.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 8.9e-06 55.8 163 27.0


User provided reference genes

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