Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g184651 Chlamydomonas reinhardtii HOM05D007197 ORTHO05D009064 2.3e-140 502.3 263 100.0
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 5.4e-25 119.0 266 37.6
MCO16G347 Micromonas commoda HOM05D007197 ORTHO05D009064 8.7e-23 111.7 227 37.9
Lsat_1_v5_gn_5_166580 Lactuca sativa HOM05D001223 ORTHO05D001058 6.9e-20 102.1 255 32.2
ECA248G2344 Erigeron canadensis HOM05D007197 ORTHO05D009064 2.6e-19 100.1 255 32.2
Gohir.A05G098300 Gossypium hirsutum HOM05D007197 ORTHO05D009064 3.4e-19 99.8 255 31.0
Carub.0001s0710 Capsella rubella HOM05D007197 ORTHO05D009064 4.5e-19 99.4 240 33.3
Manes.11G135500 Manihot esculenta HOM05D007197 ORTHO05D009064 4.5e-19 99.4 258 33.3
Lalb_Chr19g0137651 Lupinus albus HOM05D007197 ORTHO05D009064 9.9e-19 98.2 258 31.0
Sed0002926 Sechium edule HOM05D007197 ORTHO05D009064 9.9e-19 98.2 261 32.2
C08p03340 Brassica napus HOM05D007197 ORTHO05D009064 1.7e-18 97.4 248 33.1
HanXRQChr11g0340311 Helianthus annuus HOM05D007197 ORTHO05D009064 2.2e-18 97.1 255 33.3
MD11G1115100 Malus domestica HOM05D007197 ORTHO05D009064 2.2e-18 97.1 256 32.8
Actinidia03776 Actinidia chinensis HOM05D007197 ORTHO05D009064 3.8e-18 96.3 255 31.4
BolC8t47130H Brassica oleracea HOM05D007197 ORTHO05D009064 3.8e-18 96.3 246 33.7
FAN11G2804 Fragaria x ananassa HOM05D007197 ORTHO05D009064 4.9e-18 95.9 256 32.4
VMungo1127G0131 Vigna mungo HOM05D007197 ORTHO05D009064 6.4e-18 95.5 256 30.1
TAR636G0394 Trochodendron aralioides HOM05D007197 ORTHO05D009064 8.4e-18 95.1 256 30.1
Mapoly0014s0028 Marchantia polymorpha HOM05D007197 ORTHO05D009064 1.1e-17 94.7 261 29.9
BcaB03g13374 Brassica carinata HOM05D007197 ORTHO05D009064 1.4e-17 94.4 240 33.3
AT1G07745 Arabidopsis thaliana HOM05D007197 ORTHO05D009064 1.9e-17 94.0 241 33.2
CiPaw.13G100300 Carya illinoinensis HOM05D007197 ORTHO05D009064 2.4e-17 93.6 257 30.4
Cc01_g12210 Coffea canephora HOM05D007197 ORTHO05D009064 2.4e-17 93.6 257 33.1
FAN21G2562 Fragaria x ananassa HOM05D007197 ORTHO05D009064 2.4e-17 93.6 277 32.1
PSO206G0023 Papaver somniferum HOM05D007197 ORTHO05D009064 2.4e-17 93.6 258 32.2
Prupe.6G086100 Prunus persica HOM05D007197 ORTHO05D009064 2.4e-17 93.6 256 32.4
Lj3g0013433 Lotus japonicus HOM05D007197 ORTHO05D009064 3.2e-17 93.2 252 29.8
A08p35470 Brassica napus HOM05D007197 ORTHO05D009064 4.2e-17 92.8 240 32.9
BraA08t35453Z Brassica rapa HOM05D007197 ORTHO05D009064 4.2e-17 92.8 240 32.9
Solyc11g073220.3 Solanum lycopersicum HOM05D007197 ORTHO05D009064 4.2e-17 92.8 253 30.4
MELO3C013672.2 Cucumis melo HOM05D007197 ORTHO05D009064 5.4e-17 92.4 229 33.2
Rhsim01G0224100 Rhododendron simsii HOM05D007197 ORTHO05D009064 5.4e-17 92.4 226 34.1
Sopen11g030850 Solanum pennellii HOM05D007197 ORTHO05D009064 5.4e-17 92.4 253 30.0
TWI79G0955 Tripterygium wilfordii HOM05D007197 ORTHO05D009064 5.4e-17 92.4 248 32.3
Gorai.009G102000 Gossypium raimondii HOM05D007197 ORTHO05D009064 7.1e-17 92.0 264 29.2
arahy.Tifrunner.gnm1.ann1.EBM8RS Arachis hypogaea HOM05D007197 ORTHO05D009064 9.3e-17 91.7 247 29.1
RcHm_v2.0_Chr5g0062661 Rosa chinensis HOM05D007197 ORTHO05D009064 9.3e-17 91.7 256 32.4
arahy.Tifrunner.gnm1.ann1.RPJA1V Arachis hypogaea HOM05D007197 ORTHO05D009064 1.2e-16 91.3 249 28.5
Aqoxy4G03051 Aquilegia oxysepala HOM05D007197 ORTHO05D009064 3.5e-16 89.7 227 31.3
Dinv32855 Davidia involucrata HOM05D007197 ORTHO05D009064 3.5e-16 89.7 229 32.3
Duzib168G0795 Durio zibethinus HOM05D007197 ORTHO05D009064 3.5e-16 89.7 228 31.6
AL1G17970 Arabidopsis lyrata HOM05D007197 ORTHO05D009064 4.6e-16 89.4 241 34.0
ATR0033G040 Amborella trichopoda HOM05D007197 ORTHO05D009064 6.0e-16 89.0 254 31.9
Cfa011437 Carpinus fangiana HOM05D007197 ORTHO05D009064 6.0e-16 89.0 229 32.8
CsaV3_6G022120 Cucumis sativus L. HOM05D007197 ORTHO05D009064 6.0e-16 89.0 261 31.4
TPR.G1052 Trifolium pratense HOM05D007197 ORTHO05D009064 7.9e-16 88.6 228 31.6
THA.LOC104800640 Tarenaya hassleriana HOM05D007197 ORTHO05D009064 1.0e-15 88.2 229 33.2
Thecc.09G328900 Theobroma cacao HOM05D007197 ORTHO05D009064 1.0e-15 88.2 230 30.9
Atru.chr7.1106 Acer truncatum HOM05D007197 ORTHO05D009064 1.8e-15 87.4 256 29.3
Os09g0104200 Oryza sativa ssp. japonica HOM05D007197 ORTHO05D009064 1.8e-15 87.4 260 26.9
Sp1g06430 Schrenkiella parvula HOM05D007197 ORTHO05D009064 2.3e-15 87.0 241 33.6
COL.COLO4_15236 Corchorus olitorius HOM05D007197 ORTHO05D009064 3.0e-15 86.7 266 29.7
Hma1.2p1_0846F.1_g227730 Hydrangea macrophylla HOM05D007197 ORTHO05D009064 3.0e-15 86.7 229 30.1
AagrBONN_evm.TU.Sc2ySwM_228.390 Anthoceros agrestis HOM05D007197 ORTHO05D009064 3.9e-15 86.3 260 31.2
EL10Ac7g15954 Beta vulgaris HOM05D007197 ORTHO05D009064 3.9e-15 86.3 278 29.1
Eucgr.J02088 Eucalyptus grandis HOM05D007197 ORTHO05D009064 3.9e-15 86.3 257 29.6
Oeu017383.1 Olea europaea HOM05D007197 ORTHO05D009064 3.9e-15 86.3 258 29.1
Phvul.011G067900 Phaseolus vulgaris HOM05D007197 ORTHO05D009064 5.1e-15 85.9 252 29.4
Zm00001eb329200 Zea mays HOM05D007197 ORTHO05D009064 6.7e-15 85.5 256 28.9
GSVIVG01025047001 Vitis vinifera HOM05D007197 ORTHO05D009064 8.7e-15 85.1 241 29.5
Medtr4g062540 Medicago truncatula HOM05D007197 ORTHO05D009064 1.9e-14 84.0 253 28.5
Sc12g0001730 Simmondsia chinensis HOM05D007197 ORTHO05D009064 1.9e-14 84.0 257 30.4
AUR62041290 Chenopodium quinoa HOM05D007197 ORTHO05D009064 2.5e-14 83.6 259 29.3
AUR62034127 Chenopodium quinoa HOM05D007197 ORTHO05D009064 3.3e-14 83.2 256 28.9
Prupe.6G066800 Prunus persica HOM05D007197 ORTHO05D009064 3.3e-14 83.2 190 34.7
SHI05980 Sapria himalayana HOM05D000723 ORTHO05D001626 3.3e-14 83.2 232 31.9
CAN.G764.13 Capsicum annuum HOM05D007197 ORTHO05D009064 4.3e-14 82.8 226 30.1
Nn2g10506 Nelumbo nucifera HOM05D007197 ORTHO05D009064 4.3e-14 82.8 258 32.2
Pp3c23_10930 Physcomitrium patens HOM05D007197 ORTHO05D009064 5.6e-14 82.4 233 30.9
QL01p033595 Quercus lobata HOM05D007197 ORTHO05D009064 5.6e-14 82.4 229 32.8
MBI14_g30584_MAGBIO Magnolia biondii HOM05D007197 ORTHO05D009064 9.6e-14 81.6 234 32.1
Glyma.11G143900 Glycine max HOM05D007197 ORTHO05D009064 1.3e-13 81.3 229 31.0
Migut.N02658 Erythranthe guttata HOM05D007197 ORTHO05D009064 3.7e-13 79.7 227 32.6
PRCOL_00004125 Prasinoderma coloniale HOM05D007197 ORTHO05D009064 3.7e-13 79.7 248 31.5
DCAR_018914 Daucus carota HOM05D007197 ORTHO05D009064 4.8e-13 79.3 229 29.7
Nitab4.5_0000610g0220 Nicotiana tabacum HOM05D007197 ORTHO05D009064 4.8e-13 79.3 253 28.9
Ca_19199_v3 Cicer arietinum L. HOM05D007197 ORTHO05D009064 8.1e-13 78.6 221 30.3
Haze_24019 Corylus avellana HOM05D007197 ORTHO05D009064 8.1e-13 78.6 283 29.3
Nitab4.5_0003179g0070 Nicotiana tabacum HOM05D007197 ORTHO05D009064 1.1e-12 78.2 266 29.7
Haze_24013 Corylus avellana HOM05D007197 ORTHO05D009064 1.4e-12 77.8 278 29.9
CSS0011816 Camellia sinensis var. sinensis HOM05D007197 ORTHO05D009064 1.8e-12 77.4 241 31.5
ClCG02G020670 Citrullus lanatus HOM05D007197 ORTHO05D009064 2.4e-12 77.0 297 26.9
Thhalv10008243m.g Eutrema salsugineum HOM05D007197 ORTHO05D009064 1.2e-11 74.7 238 31.9
Peaxi162Scf00406g00019 Petunia axillaris HOM05D007197 ORTHO05D009064 1.9e-09 67.4 244 27.5
PRCOL_00002213 Prasinoderma coloniale HOM05D001363 ORTHO05D006255 1.6e-08 64.3 245 31.0
HPP92_017953 Vanilla planifolia HOM05D007197 ORTHO05D009064 4.6e-08 62.8 197 27.9
PSO339G6612 Papaver somniferum HOM05D007197 ORTHO05D009064 6.0e-08 62.4 179 31.3
Hund18943 Selenicereus undatus HOM05D007197 ORTHO05D009064 3.9e-07 59.7 181 31.5
vmacro14499 Vaccinium macrocarpon HOM05D007197 ORTHO05D009064 3.9e-07 59.7 308 26.0
Pp3c25_15290 Physcomitrium patens HOM05D007288 ORTHO05D009200 5.1e-07 59.3 267 28.8
SGA_v2.0_scaffold257G45723 Striga asiatica HOM05D007197 ORTHO05D009064 1.9e-06 57.4 186 29.6
SMO358G0138 Selaginella moellendorffii HOM05D007197 ORTHO05D009064 2.5e-06 57.0 254 27.6
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 5.6e-06 55.8 98 37.8


User provided reference genes

Program Settings