Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 0.0e+00 1115.5 547 100.0
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 7.5e-162 574.7 544 56.4
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 7.5e-162 574.7 544 54.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.4e-160 570.5 549 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 4.3e-157 558.9 543 53.8
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 9.2e-152 541.2 545 51.9
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 2.7e-151 539.7 548 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.0e-150 536.2 542 52.6
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 6.6e-150 535.0 546 51.6
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.1e-149 534.3 546 50.7
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 7.3e-149 531.6 542 51.3
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.6e-148 530.4 542 51.5
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.8e-148 529.6 548 51.6
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 3.6e-148 529.3 542 51.1
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 4.7e-148 528.9 546 51.1
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.1e-147 526.2 546 51.3
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.1e-147 526.2 555 52.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 6.8e-147 525.0 546 50.5
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 8.9e-147 524.6 546 51.3
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.2e-146 524.2 546 50.7
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.2e-146 524.2 546 51.5
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.2e-146 524.2 548 51.1
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-146 523.9 546 51.3
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.0e-146 523.5 546 50.7
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.6e-146 523.1 546 50.4
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 2.6e-146 523.1 546 50.7
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 4.4e-146 522.3 546 50.4
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 4.4e-146 522.3 546 50.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 4.4e-146 522.3 549 50.6
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 4.4e-146 522.3 545 51.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 5.8e-146 521.9 546 50.9
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 7.6e-146 521.5 549 50.6
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 9.9e-146 521.2 546 50.5
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-145 520.8 546 50.4
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.3e-145 520.8 546 50.5
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.3e-145 520.8 545 50.3
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.7e-145 520.4 546 50.7
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.9e-145 519.6 547 51.0
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 3.8e-145 519.2 546 50.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.8e-145 519.2 546 49.8
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 4.9e-145 518.8 545 50.1
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 4.9e-145 518.8 546 49.8
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 4.9e-145 518.8 551 50.3
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 6.4e-145 518.5 546 49.6
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 6.4e-145 518.5 546 51.5
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 6.4e-145 518.5 545 50.6
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 8.4e-145 518.1 549 49.9
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.4e-144 517.3 546 49.8
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.9e-144 516.9 555 50.1
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 3.2e-144 516.2 546 50.0
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 3.2e-144 516.2 545 49.7
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.2e-144 516.2 547 49.7
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 3.2e-144 516.2 547 50.1
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 3.2e-144 516.2 554 49.8
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 4.1e-144 515.8 539 51.2
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 4.1e-144 515.8 547 50.6
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 4.1e-144 515.8 546 50.5
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 5.4e-144 515.4 548 51.1
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 7.1e-144 515.0 552 49.6
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 7.1e-144 515.0 545 49.7
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 7.1e-144 515.0 548 50.5
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 7.1e-144 515.0 549 49.5
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 7.1e-144 515.0 545 50.3
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 9.2e-144 514.6 546 49.8
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 9.2e-144 514.6 548 50.4
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.2e-143 514.2 552 49.5
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.2e-143 514.2 546 49.6
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.2e-143 514.2 546 49.8
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.2e-143 514.2 546 49.6
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.6e-143 513.8 553 49.9
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.6e-143 513.8 545 49.5
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.6e-143 513.8 546 49.3
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.7e-143 513.1 546 50.0
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 3.5e-143 512.7 546 50.4
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 3.5e-143 512.7 545 49.5
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 3.5e-143 512.7 548 51.1
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 4.6e-143 512.3 546 49.6
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 6.0e-143 511.9 547 49.5
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 7.8e-143 511.5 546 49.5
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 7.8e-143 511.5 546 50.4
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 7.8e-143 511.5 546 49.6
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 7.8e-143 511.5 546 50.7
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.0e-142 511.1 545 49.5
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.0e-142 511.1 547 49.5
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.3e-142 510.8 546 50.2
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 3.0e-142 509.6 546 50.4
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 6.6e-142 508.4 545 50.6
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 3.3e-141 506.1 554 48.7
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 4.3e-141 505.8 546 50.2
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 7.3e-141 505.0 547 49.5
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 9.6e-141 504.6 570 48.2
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 1.2e-140 504.2 546 49.5
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.2e-140 504.2 546 50.0
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.1e-140 503.4 545 48.4
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.1e-140 503.4 548 49.8
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.6e-140 502.7 546 49.8
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.7e-140 502.3 545 49.4
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 8.1e-140 501.5 553 48.3
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 8.1e-140 501.5 545 49.9
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.8e-139 500.4 546 49.5
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.5e-138 497.3 522 50.4
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-138 497.3 541 50.3
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.6e-138 496.5 541 50.1
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 3.8e-137 492.7 576 46.9
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.4e-136 488.8 549 48.3
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 5.4e-136 488.8 470 54.3
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 5.4e-136 488.8 502 51.0
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 7.1e-136 488.4 545 47.7
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.6e-135 485.7 505 50.1
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 8.4e-129 464.9 543 47.0
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 7.1e-128 461.8 549 46.1
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 2.7e-127 459.9 554 45.7
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.5e-125 454.1 555 45.9
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 6.2e-124 448.7 543 46.6
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 2.0e-122 443.7 457 50.5
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 8.4e-121 438.3 553 46.5
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 8.4e-121 438.3 539 45.3
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 1.2e-119 434.5 548 45.3
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.4e-112 411.0 424 50.0
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 4.2e-112 409.5 426 50.7
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.7e-108 396.4 530 43.6
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.7e-108 396.4 530 43.6
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 2.8e-100 370.2 544 40.6
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 2.2e-89 334.0 599 36.7
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.6e-87 327.8 333 50.2
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 6.1e-87 325.9 328 51.2
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.5e-77 294.7 308 52.3
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.2e-73 280.8 291 49.8
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 3.7e-68 263.5 536 34.7
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.2e-63 248.4 199 61.3
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 2.1e-63 247.7 326 42.9
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.7e-57 228.0 257 47.5
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 9.5e-56 222.2 328 39.0
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-34 151.4 501 31.1
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-30 138.7 119 54.6
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 7.6e-29 132.9 145 49.7
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 7.3e-24 116.3 126 49.2
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.2e-23 115.5 76 68.4
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 1.8e-22 111.7 183 37.2
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 3.4e-21 107.5 171 38.6
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 8.7e-17 92.8 124 37.9
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.5e-16 91.3 125 38.4
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.3e-16 90.9 114 46.5
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 4.3e-16 90.5 131 35.9
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 6.2e-15 86.7 94 46.8
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 3.1e-14 84.3 123 35.0
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 3.1e-14 84.3 123 35.0
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 3.4e-13 80.9 109 36.7
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 3.4e-13 80.9 109 36.7
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 3.4e-13 80.9 60 65.0
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.3e-12 79.0 107 42.1
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 6.4e-12 76.6 112 34.8
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 6.4e-12 76.6 112 34.8
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.9e-11 75.1 59 57.6
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-07 62.4 66 54.5
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 4.8e-07 60.5 72 47.2


User provided reference genes

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