Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g144002 Chlamydomonas reinhardtii HOM05D006623 ORTHO05D008102 0.0e+00 1168.3 686 100.0
MCO15G029 Micromonas commoda HOM05D007020 ORTHO05D008102 9.2e-24 116.3 599 26.2
PRCOL_00002894 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 1.6e-15 89.0 486 25.9
Cre02.g078750 Chlamydomonas reinhardtii HOM05D007020 ORTHO05D008935 6.2e-12 77.0 297 24.9
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 1.1e-11 76.3 396 24.5
ClCG08G014040 Citrullus lanatus HOM05D007020 ORTHO05D008935 2.9e-09 68.2 409 23.0
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 6.4e-09 67.0 262 26.3
MCO04G266 Micromonas commoda HOM05D007020 ORTHO05D008102 3.2e-08 64.7 536 25.4
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 4.1e-08 64.3 387 22.2
CsaV3_2G024410 Cucumis sativus L. HOM05D007020 ORTHO05D008935 7.1e-08 63.5 294 23.8
Dinv31889 Davidia involucrata HOM05D007020 ORTHO05D008935 1.2e-07 62.8 408 23.5
PRCOL_00005185 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 1.2e-07 62.8 458 24.0
MSTRG.20386 Avicennia marina HOM05D006623 ORTHO05D008102 2.1e-07 62.0 69 49.3
Sed0005688 Sechium edule HOM05D006623 ORTHO05D008102 2.7e-07 61.6 69 50.7
CBR_g29446 Chara braunii HOM05D007020 ORTHO05D008935 3.5e-07 61.2 315 25.4
Migut.B00980 Erythranthe guttata HOM05D006623 ORTHO05D008102 3.5e-07 61.2 73 45.2
Zm00001eb137040 Zea mays HOM05D006623 ORTHO05D008102 3.5e-07 61.2 80 43.8
EL10Ac4g09820 Beta vulgaris HOM05D006623 ORTHO05D008102 4.6e-07 60.8 73 46.6
Solyc01g100400.3 Solanum lycopersicum HOM05D006623 ORTHO05D008102 4.6e-07 60.8 78 42.3
Sopen01g043920 Solanum pennellii HOM05D006623 ORTHO05D008102 4.6e-07 60.8 78 42.3
Nitab4.5_0003030g0130 Nicotiana tabacum HOM05D007020 ORTHO05D008935 6.0e-07 60.5 296 23.3
Peaxi162Scf00673g00027 Petunia axillaris HOM05D006623 ORTHO05D008102 6.0e-07 60.5 68 47.1
PGSC0003DMG400002774 Solanum tuberosum HOM05D006623 ORTHO05D008102 6.0e-07 60.5 78 42.3
CAN.G1715.8 Capsicum annuum HOM05D006623 ORTHO05D008102 7.8e-07 60.1 78 42.3
AUR62036707 Chenopodium quinoa HOM05D007020 ORTHO05D008935 7.8e-07 60.1 298 25.2
HanXRQChr04g0096321 Helianthus annuus HOM05D006623 ORTHO05D008102 7.8e-07 60.1 71 45.1
HanXRQChr11g0347231 Helianthus annuus HOM05D006623 ORTHO05D008102 7.8e-07 60.1 71 45.1
Sed0026116 Sechium edule HOM05D007020 ORTHO05D008935 7.8e-07 60.1 409 22.0
vmacro19792 Vaccinium macrocarpon HOM05D006623 ORTHO05D008102 7.8e-07 60.1 80 45.0
EL10Ac1g02092 Beta vulgaris HOM05D007020 ORTHO05D008935 1.0e-06 59.7 294 24.5
Nitab4.5_0000368g0170 Nicotiana tabacum HOM05D006623 ORTHO05D008102 1.0e-06 59.7 90 40.0
CBR_g631 Chara braunii HOM05D006623 ORTHO05D008102 1.3e-06 59.3 84 45.2
TAR376G1009 Trochodendron aralioides HOM05D007020 ORTHO05D008935 1.3e-06 59.3 294 25.2
unitig_37.g12622 Utricularia gibba HOM05D006623 ORTHO05D008102 1.3e-06 59.3 64 46.9
Carub.0002s2293 Capsella rubella HOM05D007020 ORTHO05D008935 1.7e-06 58.9 96 36.5
Manes.06G014100 Manihot esculenta HOM05D007020 ORTHO05D008935 1.7e-06 58.9 102 36.3
Hund05155 Selenicereus undatus HOM05D007020 ORTHO05D008935 2.3e-06 58.5 102 35.3
HPP92_014540 Vanilla planifolia HOM05D006623 ORTHO05D008102 2.3e-06 58.5 70 48.6
arahy.Tifrunner.gnm1.ann1.CF3I4Q Arachis hypogaea HOM05D006623 ORTHO05D008102 3.0e-06 58.2 69 47.8
Lju926C10T1 Lonicera japonica HOM05D006623 ORTHO05D008102 3.0e-06 58.2 80 43.8
Nitab4.5_0011526g0010 Nicotiana tabacum HOM05D006623 ORTHO05D008102 3.0e-06 58.2 77 41.6
Potri.002G016800 Populus trichocarpa HOM05D007020 ORTHO05D008935 3.0e-06 58.2 102 35.3
Thecc.05G322000 Theobroma cacao HOM05D006623 ORTHO05D008102 3.0e-06 58.2 69 47.8
CSS0001336 Camellia sinensis var. sinensis HOM05D006623 ORTHO05D008102 3.9e-06 57.8 69 47.8
CSS0040730 Camellia sinensis var. sinensis HOM05D006623 ORTHO05D008102 3.9e-06 57.8 69 47.8
MELO3C004192.2 Cucumis melo HOM05D006623 ORTHO05D008102 3.9e-06 57.8 69 49.3
Dinv30881 Davidia involucrata HOM05D006623 ORTHO05D008102 3.9e-06 57.8 69 47.8
Gohir.A08G206200 Gossypium hirsutum HOM05D006623 ORTHO05D008102 3.9e-06 57.8 69 46.4
MBI18_g31673_MAGBIO Magnolia biondii HOM05D006623 ORTHO05D008102 3.9e-06 57.8 72 44.4
SGA_v2.0_scaffold53G19299 Striga asiatica HOM05D006623 ORTHO05D008102 3.9e-06 57.8 86 41.9
AL2G36070 Arabidopsis lyrata HOM05D007020 ORTHO05D008935 5.1e-06 57.4 107 35.5
AT1G76050 Arabidopsis thaliana HOM05D007020 ORTHO05D008935 5.1e-06 57.4 107 35.5
AUR62013887 Chenopodium quinoa HOM05D007020 ORTHO05D008935 5.1e-06 57.4 298 24.8
Gohir.D08G223000 Gossypium hirsutum HOM05D006623 ORTHO05D008102 5.1e-06 57.4 69 46.4
Gorai.004G236900 Gossypium raimondii HOM05D006623 ORTHO05D008102 5.1e-06 57.4 69 46.4
Os12g0560500 Oryza sativa ssp. japonica HOM05D006623 ORTHO05D008102 5.1e-06 57.4 69 46.4
PRCOL_00000246 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 5.1e-06 57.4 315 24.1
Sabra02G0013400 Salix brachista HOM05D007020 ORTHO05D008935 5.1e-06 57.4 102 34.3
Aqoxy1G01536 Aquilegia oxysepala HOM05D006623 ORTHO05D008102 6.6e-06 57.0 69 47.8
arahy.Tifrunner.gnm1.ann1.WHE5ZB Arachis hypogaea HOM05D006623 ORTHO05D008102 6.6e-06 57.0 69 47.8
Duzib177G0147 Durio zibethinus HOM05D006623 ORTHO05D008102 6.6e-06 57.0 64 48.4
Eucgr.L00270 Eucalyptus grandis HOM05D006623 ORTHO05D008102 6.6e-06 57.0 71 45.1
Thhalv10023586m.g Eutrema salsugineum HOM05D006623 ORTHO05D008102 6.6e-06 57.0 64 46.9
THA.LOC104809629 Tarenaya hassleriana HOM05D007020 ORTHO05D008935 6.6e-06 57.0 102 36.3
TAR633G1459 Trochodendron aralioides HOM05D007020 ORTHO05D008935 6.6e-06 57.0 294 24.8
Cre16.g689100 Chlamydomonas reinhardtii HOM05D006791 ORTHO05D008221 8.6e-06 56.6 195 26.2
Thhalv10018588m.g Eutrema salsugineum HOM05D007020 ORTHO05D008935 8.6e-06 56.6 288 24.0
Psat6g152160 Pisum sativum HOM05D006623 ORTHO05D008102 8.6e-06 56.6 73 47.9
QL03p013461 Quercus lobata HOM05D006623 ORTHO05D008102 8.6e-06 56.6 64 45.3
QL03p040046 Quercus lobata HOM05D006623 ORTHO05D008102 8.6e-06 56.6 64 45.3
Rhsim05G0132300 Rhododendron simsii HOM05D006623 ORTHO05D008102 8.6e-06 56.6 69 46.4
SGA_v2.0_scaffold341G49357 Striga asiatica HOM05D006791 ORTHO05D008221 8.6e-06 56.6 94 35.1


User provided reference genes

Program Settings