Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g142607 Chlamydomonas reinhardtii HOM05D002639 ORTHO05D003094 0.0e+00 2667.5 2147 100.0
Cre02.g143467 Chlamydomonas reinhardtii HOM05D002639 ORTHO05D145987 9.2e-38 164.5 385 34.0
Cre16.g692600 Chlamydomonas reinhardtii HOM05D002639 ORTHO05D003094 1.3e-31 144.1 259 40.2
Cre13.g570450 Chlamydomonas reinhardtii HOM05D002639 ORTHO05D138904 1.7e-20 107.1 111 55.9
Pp3c23_850 Physcomitrium patens HOM05D002639 ORTHO05D003094 6.2e-18 98.6 200 30.5
SMO115G0256 Selaginella moellendorffii HOM05D002639 ORTHO05D003094 3.1e-17 96.3 191 33.0
Mapoly0071s0122 Marchantia polymorpha HOM05D002639 ORTHO05D003094 4.4e-16 92.4 200 31.5
Thhalv10025061m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 2.2e-15 90.1 194 29.9
PRCOL_00006212 Prasinoderma coloniale HOM05D002639 ORTHO05D003094 2.2e-15 90.1 211 31.3
BraA03t14040Z Brassica rapa HOM05D002639 ORTHO05D003094 3.8e-15 89.4 194 29.9
AL7G39400 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 4.9e-15 89.0 195 30.3
Carub.0007s2578 Capsella rubella HOM05D002639 ORTHO05D003094 4.9e-15 89.0 195 30.8
THA.LOC104820271 Tarenaya hassleriana HOM05D002639 ORTHO05D003094 4.9e-15 89.0 194 28.4
Aa31LG10G6270 Aethionema arabicum HOM05D002639 ORTHO05D005651 8.4e-15 88.2 194 28.9
THA.LOC104827344 Tarenaya hassleriana HOM05D002639 ORTHO05D003094 8.4e-15 88.2 199 30.7
BcaB04g18335 Brassica carinata HOM05D002639 ORTHO05D003094 1.1e-14 87.8 194 29.4
Ciclev10004735m.g Citrus clementina HOM05D002639 ORTHO05D003094 1.1e-14 87.8 195 29.7
SEGI_08688 Sequoiadendron giganteum HOM05D002639 ORTHO05D003094 1.4e-14 87.4 200 28.5
COL.COLO4_13861 Corchorus olitorius HOM05D002639 ORTHO05D003094 1.9e-14 87.0 195 29.7
PSO170G1158 Papaver somniferum HOM05D002639 ORTHO05D003094 1.9e-14 87.0 191 29.8
HanXRQChr17g0538731 Helianthus annuus HOM05D002639 ORTHO05D003094 2.4e-14 86.7 195 29.7
AL7G47080 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 4.2e-14 85.9 197 29.4
BcaC06g32970 Brassica carinata HOM05D002639 ORTHO05D003094 4.2e-14 85.9 191 29.8
BcaC07g37936 Brassica carinata HOM05D002639 ORTHO05D003094 4.2e-14 85.9 194 28.9
A08p12010 Brassica napus HOM05D002639 ORTHO05D003094 4.2e-14 85.9 194 29.4
HanXRQChr03g0081551 Helianthus annuus HOM05D002639 ORTHO05D003094 4.2e-14 85.9 194 26.8
SEGI_37885 Sequoiadendron giganteum HOM05D002639 ORTHO05D003094 4.2e-14 85.9 194 29.9
Aa31LG8G3730 Aethionema arabicum HOM05D002639 ORTHO05D003094 5.4e-14 85.5 194 28.9
PRCOL_00000359 Prasinoderma coloniale HOM05D002639 ORTHO05D003094 5.4e-14 85.5 210 30.0
Prupe.1G135200 Prunus persica HOM05D002639 ORTHO05D003094 5.4e-14 85.5 194 27.8
MCO11G485 Micromonas commoda HOM05D002639 ORTHO05D003094 7.1e-14 85.1 191 31.4
AT4G15880 Arabidopsis thaliana HOM05D002639 ORTHO05D003094 9.3e-14 84.7 195 29.2
CARHR180480 Cardamine hirsuta HOM05D002639 ORTHO05D003094 9.3e-14 84.7 195 27.7
Oeu035678.1 Olea europaea HOM05D002639 ORTHO05D003094 9.3e-14 84.7 169 29.0
Pp3c22_12640 Physcomitrium patens HOM05D002639 ORTHO05D003094 9.3e-14 84.7 199 29.6
BcaC06g33440 Brassica carinata HOM05D002639 ORTHO05D003094 1.2e-13 84.3 194 28.9
C07p47470 Brassica napus HOM05D002639 ORTHO05D003094 1.2e-13 84.3 194 28.9
BolC7t45274H Brassica oleracea HOM05D002639 ORTHO05D003094 1.2e-13 84.3 194 28.9
BolC8t48321H Brassica oleracea HOM05D002639 ORTHO05D003094 1.2e-13 84.3 193 30.1
Thhalv10005561m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 2.1e-13 83.6 195 29.2
Thecc.04G285500 Theobroma cacao HOM05D002639 ORTHO05D003094 2.1e-13 83.6 195 29.2
TPR.G3166 Trifolium pratense HOM05D002639 ORTHO05D003094 2.1e-13 83.6 194 27.8
Cfa015393 Carpinus fangiana HOM05D002639 ORTHO05D003094 2.7e-13 83.2 186 28.0
HanXRQChr06g0173971 Helianthus annuus HOM05D002639 ORTHO05D003094 2.7e-13 83.2 195 28.7
Lj6g0011426 Lotus japonicus HOM05D002639 ORTHO05D003094 2.7e-13 83.2 195 28.7
Lsat_1_v5_gn_3_24681 Lactuca sativa HOM05D002639 ORTHO05D003094 3.5e-13 82.8 195 27.7
QL06p009035 Quercus lobata HOM05D002639 ORTHO05D003094 3.5e-13 82.8 195 27.7
Sp7g14290 Schrenkiella parvula HOM05D002639 ORTHO05D003094 3.5e-13 82.8 192 30.2
Carub.0007s3326 Capsella rubella HOM05D002639 ORTHO05D003094 4.6e-13 82.4 194 27.8
Medtr2g436660 Medicago truncatula HOM05D002639 ORTHO05D003094 6.0e-13 82.0 190 27.9
MCO01G225 Micromonas commoda HOM05D002639 ORTHO05D003094 6.0e-13 82.0 194 30.9
Aa31LG5G17480 Aethionema arabicum HOM05D002639 ORTHO05D003094 7.8e-13 81.6 199 28.6
Haze_01193 Corylus avellana HOM05D002639 ORTHO05D003094 7.8e-13 81.6 194 25.8
Medtr4g119970 Medicago truncatula HOM05D002639 ORTHO05D003094 1.0e-12 81.3 194 29.9
Sc13g0003440 Simmondsia chinensis HOM05D002639 ORTHO05D003094 1.0e-12 81.3 190 27.9
ATR0796G180 Amborella trichopoda HOM05D002639 ORTHO05D003094 1.3e-12 80.9 191 27.7
BcaB04g21301 Brassica carinata HOM05D002639 ORTHO05D003094 1.3e-12 80.9 199 28.6
BcaC05g29771 Brassica carinata HOM05D002639 ORTHO05D003094 1.3e-12 80.9 199 24.1
Lj6A677T76 Lonicera japonica HOM05D002639 ORTHO05D003094 1.3e-12 80.9 199 26.1
PGR031G1085 Punica granatum HOM05D002639 ORTHO05D003094 1.3e-12 80.9 194 26.8
AT3G06910 Arabidopsis thaliana HOM05D002639 ORTHO05D003094 1.7e-12 80.5 199 29.6
BNapus_Darmor_BZH_scaffold_117p00160 Brassica napus HOM05D002639 ORTHO05D003094 1.7e-12 80.5 199 25.6
ECA240G4557 Erigeron canadensis HOM05D002639 ORTHO05D003094 1.7e-12 80.5 194 27.8
MD16G1167200 Malus domestica HOM05D002639 ORTHO05D003094 1.7e-12 80.5 194 27.3
Sp3g05860 Schrenkiella parvula HOM05D002639 ORTHO05D003094 1.7e-12 80.5 199 28.6
Zm00001eb111330 Zea mays HOM05D002639 ORTHO05D003094 1.7e-12 80.5 194 28.4
AagrBONN_evm.TU.Sc2ySwM_340.204 Anthoceros agrestis HOM05D002639 ORTHO05D003094 2.3e-12 80.1 199 28.6
Thhalv10020659m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 2.3e-12 80.1 200 27.0
Ca_21490_v3 Cicer arietinum L. HOM05D002639 ORTHO05D003094 3.0e-12 79.7 191 27.2
Hma1.2p1_1185F.1_g265060 Hydrangea macrophylla HOM05D002639 ORTHO05D003094 3.0e-12 79.7 195 27.2
Lalb_Chr07g0177741 Lupinus albus HOM05D002639 ORTHO05D003094 3.0e-12 79.7 195 26.7
Nitab4.5_0000570g0140 Nicotiana tabacum HOM05D002639 ORTHO05D003094 3.0e-12 79.7 195 27.7
GSVIVG01017729001 Vitis vinifera HOM05D002639 ORTHO05D003094 3.0e-12 79.7 195 27.2
BraA01t04407Z Brassica rapa HOM05D002639 ORTHO05D003094 3.9e-12 79.3 199 25.1
Lalb_Chr20g0114601 Lupinus albus HOM05D002639 ORTHO05D003094 3.9e-12 79.3 194 24.7
Psat1g154240 Pisum sativum HOM05D002639 ORTHO05D003094 3.9e-12 79.3 190 26.8
Potri.008G221500 Populus trichocarpa HOM05D002639 ORTHO05D003094 3.9e-12 79.3 196 30.1
CANSAT78G0264 Cannabis sativa HOM05D002639 ORTHO05D003094 5.1e-12 79.0 192 29.7
Migut.G00153 Erythranthe guttata HOM05D002639 ORTHO05D003094 5.1e-12 79.0 194 25.8
Gorai.002G028400 Gossypium raimondii HOM05D002639 ORTHO05D003094 5.1e-12 79.0 195 27.7
Psat4g027320 Pisum sativum HOM05D002639 ORTHO05D003094 5.1e-12 79.0 191 26.7
SEGI_27665 Sequoiadendron giganteum HOM05D002639 ORTHO05D003094 5.1e-12 79.0 186 28.0
AL3G18030 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 6.6e-12 78.6 199 29.1
CSS0003276 Camellia sinensis var. sinensis HOM05D002639 ORTHO05D003094 6.6e-12 78.6 195 26.7
CSS0011099 Camellia sinensis var. sinensis HOM05D002639 ORTHO05D003094 6.6e-12 78.6 194 25.3
Ca_01932_v3 Cicer arietinum L. HOM05D002639 ORTHO05D003094 6.6e-12 78.6 190 26.3
Migut.N00090 Erythranthe guttata HOM05D002639 ORTHO05D003094 6.6e-12 78.6 190 28.4
MD13G1167800 Malus domestica HOM05D002639 ORTHO05D003094 6.6e-12 78.6 194 27.8
PSO832G1526 Papaver somniferum HOM05D002639 ORTHO05D003094 6.6e-12 78.6 194 25.8
Sed0000099 Sechium edule HOM05D002639 ORTHO05D003094 6.6e-12 78.6 194 26.3
SGA_v2.0_scaffold67G22629 Striga asiatica HOM05D002639 ORTHO05D003094 8.7e-12 78.2 191 27.2
TWI53G0486 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 8.7e-12 78.2 194 26.8
MSTRG.10098 Avicennia marina HOM05D002639 ORTHO05D003094 1.1e-11 77.8 191 27.7
BolC1t05578H Brassica oleracea HOM05D002639 ORTHO05D003094 1.1e-11 77.8 199 24.6
CARHR081520 Cardamine hirsuta HOM05D002639 ORTHO05D003094 1.1e-11 77.8 199 27.6
ClCG06G005110 Citrullus lanatus HOM05D002639 ORTHO05D003094 1.1e-11 77.8 194 27.3
Cc03_g01820 Coffea canephora HOM05D002639 ORTHO05D003094 1.1e-11 77.8 193 24.9
MELO3C021328.2 Cucumis melo HOM05D002639 ORTHO05D003094 1.1e-11 77.8 194 27.3
Peaxi162Scf00646g00224 Petunia axillaris HOM05D002639 ORTHO05D003094 1.1e-11 77.8 195 26.7
Aqoxy2G02966 Aquilegia oxysepala HOM05D002639 ORTHO05D003094 1.5e-11 77.4 191 27.7
BcaC09g47927 Brassica carinata HOM05D002639 ORTHO05D003094 1.5e-11 77.4 199 24.6
Dinv29750 Davidia involucrata HOM05D002639 ORTHO05D003094 1.5e-11 77.4 194 24.7
Dinv44376 Davidia involucrata HOM05D002639 ORTHO05D003094 1.5e-11 77.4 195 27.2
Nitab4.5_0008499g0020 Nicotiana tabacum HOM05D002639 ORTHO05D003094 1.5e-11 77.4 194 25.8
Sabra10G0008800 Salix brachista HOM05D002639 ORTHO05D003094 1.5e-11 77.4 185 29.2
Gohir.D10G170600 Gossypium hirsutum HOM05D002639 ORTHO05D003094 1.9e-11 77.0 195 28.2
Lj4g0016775 Lotus japonicus HOM05D002639 ORTHO05D003094 1.9e-11 77.0 193 26.4
HPP92_013719 Vanilla planifolia HOM05D002639 ORTHO05D003094 1.9e-11 77.0 276 25.0
CiPaw.01G147900 Carya illinoinensis HOM05D002639 ORTHO05D003094 2.5e-11 76.6 194 24.2
Eucgr.B01592 Eucalyptus grandis HOM05D002639 ORTHO05D003094 2.5e-11 76.6 191 28.3
Gorai.011G190600 Gossypium raimondii HOM05D002639 ORTHO05D003094 2.5e-11 76.6 195 28.2
Rhsim04G0223300 Rhododendron simsii HOM05D002639 ORTHO05D003094 2.5e-11 76.6 194 24.7
Rhsim09G0006900 Rhododendron simsii HOM05D002639 ORTHO05D003094 2.5e-11 76.6 194 24.7
PGSC0003DMG400004634 Solanum tuberosum HOM05D002639 ORTHO05D003094 2.5e-11 76.6 195 27.2
Actinidia00017 Actinidia chinensis HOM05D002639 ORTHO05D003094 3.3e-11 76.3 181 26.0
CAN.G484.35 Capsicum annuum HOM05D002639 ORTHO05D003094 3.3e-11 76.3 195 28.2
CsaV3_6G022290 Cucumis sativus L. HOM05D002639 ORTHO05D003094 3.3e-11 76.3 194 26.8
Carub.0003s0643 Capsella rubella HOM05D002639 ORTHO05D003094 4.3e-11 75.9 199 29.1
Phvul.003G106100 Phaseolus vulgaris HOM05D002639 ORTHO05D003094 4.3e-11 75.9 190 25.3
RcHm_v2.0_Chr4g0422391 Rosa chinensis HOM05D002639 ORTHO05D003094 4.3e-11 75.9 194 26.8
VMungo1215G3056 Vigna mungo HOM05D002639 ORTHO05D003094 4.3e-11 75.9 191 25.1
Actinidia40277 Actinidia chinensis HOM05D002639 ORTHO05D003094 5.6e-11 75.5 169 25.4
ECA246G1134 Erigeron canadensis HOM05D002639 ORTHO05D003094 5.6e-11 75.5 194 25.3
FAN12G2797 Fragaria x ananassa HOM05D002639 ORTHO05D003094 5.6e-11 75.5 194 26.3
FAN12G3880 Fragaria x ananassa HOM05D002639 ORTHO05D003094 5.6e-11 75.5 194 26.3
Gohir.A10G164400 Gossypium hirsutum HOM05D002639 ORTHO05D003094 5.6e-11 75.5 192 28.1
Lalb_Chr18g0051661 Lupinus albus HOM05D002639 ORTHO05D003094 5.6e-11 75.5 194 23.7
Phvul.009G248500 Phaseolus vulgaris HOM05D002639 ORTHO05D003094 5.6e-11 75.5 191 27.2
Solyc12g099530.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 5.6e-11 75.5 195 27.7
Actinidia14298 Actinidia chinensis HOM05D002639 ORTHO05D003094 7.3e-11 75.1 181 27.1
EL10Ac3g06606 Beta vulgaris HOM05D002639 ORTHO05D003094 7.3e-11 75.1 194 27.3
Lsat_1_v5_gn_5_62580 Lactuca sativa HOM05D002639 ORTHO05D003094 7.3e-11 75.1 194 25.8
Sed0005683 Sechium edule HOM05D002639 ORTHO05D003094 7.3e-11 75.1 195 25.6
vmacro08160 Vaccinium macrocarpon HOM05D002639 ORTHO05D003094 7.3e-11 75.1 194 25.8
BraA04t16673Z Brassica rapa HOM05D002639 ORTHO05D003094 9.6e-11 74.7 203 29.1
CAN.G129.28 Capsicum annuum HOM05D002639 ORTHO05D003094 9.6e-11 74.7 194 26.3
FAN17G1452 Fragaria x ananassa HOM05D002639 ORTHO05D003094 9.6e-11 74.7 194 28.4
PSO210G1023 Papaver somniferum HOM05D002639 ORTHO05D003094 9.6e-11 74.7 186 24.7
Sp7g06040 Schrenkiella parvula HOM05D002639 ORTHO05D003094 9.6e-11 74.7 195 28.7
Sopen12g034210 Solanum pennellii HOM05D002639 ORTHO05D003094 9.6e-11 74.7 195 27.7
arahy.Tifrunner.gnm1.ann1.L0QAVJ Arachis hypogaea HOM05D002639 ORTHO05D003094 1.3e-10 74.3 219 24.7
A04p10120 Brassica napus HOM05D002639 ORTHO05D003094 1.3e-10 74.3 195 29.2
FAN07G0222 Fragaria x ananassa HOM05D002639 ORTHO05D003094 1.3e-10 74.3 194 28.4
Glyma.09G044400 Glycine max HOM05D002639 ORTHO05D003094 1.3e-10 74.3 191 27.7
Glyma.15G148700 Glycine max HOM05D002639 ORTHO05D003094 1.3e-10 74.3 195 27.2
Nitab4.5_0000960g0070 Nicotiana tabacum HOM05D002639 ORTHO05D003094 1.3e-10 74.3 169 26.0
Zm00001eb131540 Zea mays HOM05D002639 ORTHO05D003094 1.3e-10 74.3 190 28.4
A03p49390 Brassica napus HOM05D002639 ORTHO05D003094 2.1e-10 73.6 159 30.2
Duzib151G0387 Durio zibethinus HOM05D002639 ORTHO05D003094 2.1e-10 73.6 165 29.1
Duzib212G0172 Durio zibethinus HOM05D002639 ORTHO05D003094 2.1e-10 73.6 165 28.5
Glyma.17G027100 Glycine max HOM05D002639 ORTHO05D003094 2.1e-10 73.6 190 26.3
Nitab4.5_0003466g0130 Nicotiana tabacum HOM05D002639 ORTHO05D003094 2.1e-10 73.6 166 27.7
PSO832G1698 Papaver somniferum HOM05D002639 ORTHO05D003094 2.1e-10 73.6 194 27.3
Ah.04g153570 Amaranthus hybridus HOM05D002639 ORTHO05D003094 2.8e-10 73.2 194 26.3
CiPaw.02G082600 Carya illinoinensis HOM05D002639 ORTHO05D003094 2.8e-10 73.2 169 24.9
DCAR_023286 Daucus carota HOM05D002639 ORTHO05D003094 2.8e-10 73.2 191 25.7
Peaxi162Scf00498g00738 Petunia axillaris HOM05D002639 ORTHO05D003094 2.8e-10 73.2 169 26.0
TWI73G0200 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 2.8e-10 73.2 190 26.3
TAR365G0991 Trochodendron aralioides HOM05D002639 ORTHO05D003094 2.8e-10 73.2 190 24.7
TWI09G0727 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 3.6e-10 72.8 190 28.9
VMungo1309G0779 Vigna mungo HOM05D002639 ORTHO05D003094 3.6e-10 72.8 190 25.3
Glyma.07G246900 Glycine max HOM05D002639 ORTHO05D003094 4.8e-10 72.4 169 27.2
MSTRG.3909 Avicennia marina HOM05D002639 ORTHO05D003094 8.1e-10 71.6 194 27.3
CARHR290400 Cardamine hirsuta HOM05D002639 ORTHO05D003094 8.1e-10 71.6 178 27.5
MBI19_g13202_MAGBIO Magnolia biondii HOM05D002639 ORTHO05D003094 1.4e-09 70.9 202 25.2
Solyc01g066830.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 1.4e-09 70.9 190 24.7
Lj3A817T82 Lonicera japonica HOM05D002639 ORTHO05D003094 1.8e-09 70.5 177 26.6
MBI18_g06865_MAGBIO Magnolia biondii HOM05D002639 ORTHO05D003094 1.8e-09 70.5 181 28.7
Sopen01g028430 Solanum pennellii HOM05D002639 ORTHO05D003094 1.8e-09 70.5 190 24.7
AUR62040372 Chenopodium quinoa HOM05D002639 ORTHO05D003094 2.4e-09 70.1 182 25.3
CDE02G3750 Ceratophyllum demersum HOM05D002639 ORTHO05D003094 3.1e-09 69.7 191 24.6
BcaB06g27008 Brassica carinata HOM05D002639 ORTHO05D003094 4.0e-09 69.3 195 27.7
BcaC02g09510 Brassica carinata HOM05D002639 ORTHO05D003094 4.0e-09 69.3 195 28.2
C04p43590 Brassica napus HOM05D002639 ORTHO05D003094 5.3e-09 68.9 194 28.4
BolC4t25940H Brassica oleracea HOM05D002639 ORTHO05D003094 5.3e-09 68.9 194 28.4
SGA_v2.0_scaffold18G08302 Striga asiatica HOM05D002639 ORTHO05D003094 6.9e-09 68.6 198 25.3
Cpa.g.sc16.178 Carica papaya HOM05D002639 ORTHO05D003094 1.2e-08 67.8 185 24.9
Potri.010G013700 Populus trichocarpa HOM05D002639 ORTHO05D003094 1.2e-08 67.8 179 27.9
Hund20545 Selenicereus undatus HOM05D002639 ORTHO05D003094 2.6e-08 66.6 158 28.5
unitig_32.g11872 Utricularia gibba HOM05D002639 ORTHO05D003094 5.8e-08 65.5 191 24.1
HPP92_000409 Vanilla planifolia HOM05D002639 ORTHO05D003094 1.7e-07 63.9 191 24.6
Os01g0355900 Oryza sativa ssp. japonica HOM05D002639 ORTHO05D003094 2.9e-07 63.2 133 27.8
Os03g0344300 Oryza sativa ssp. japonica HOM05D002639 ORTHO05D003094 3.8e-07 62.8 80 35.0
AUR62041504 Chenopodium quinoa HOM05D002639 ORTHO05D003094 4.2e-06 59.3 158 25.3


User provided reference genes

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