Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 6.4e-198 694.1 409 100.0
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.3e-38 164.1 233 46.4
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.7e-17 94.7 256 36.3
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.2e-16 90.1 182 33.5
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 9.4e-16 89.0 237 31.6
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 4.6e-15 86.7 226 30.5
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 6.1e-15 86.3 233 29.2
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 7.9e-15 85.9 233 30.0
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.0e-14 85.5 182 31.9
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.4e-14 85.1 182 31.3
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.4e-14 85.1 182 32.4
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.4e-14 85.1 183 29.5
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.8e-14 84.7 226 30.1
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.3e-14 84.3 187 30.5
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 2.3e-14 84.3 187 31.0
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 2.3e-14 84.3 237 30.8
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 3.0e-14 84.0 233 30.0
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 3.0e-14 84.0 183 29.5
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.0e-14 84.0 183 30.1
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 5.1e-14 83.2 182 32.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 6.7e-14 82.8 185 30.8
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 6.7e-14 82.8 181 29.3
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 8.8e-14 82.4 182 32.4
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 8.8e-14 82.4 183 32.2
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.1e-13 82.0 236 31.4
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.1e-13 82.0 238 30.7
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.5e-13 81.6 187 29.4
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.5e-13 81.6 187 29.4
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.5e-13 81.6 182 31.9
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.5e-13 81.6 182 30.8
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 2.0e-13 81.3 187 29.4
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 2.0e-13 81.3 233 29.2
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.5e-13 80.9 183 30.6
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 2.5e-13 80.9 182 31.9
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 2.5e-13 80.9 185 30.3
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.3e-13 80.5 226 29.2
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 4.3e-13 80.1 187 28.9
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 4.3e-13 80.1 184 29.9
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 4.3e-13 80.1 237 30.0
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 4.3e-13 80.1 188 29.3
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 5.7e-13 79.7 187 29.4
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 5.7e-13 79.7 234 29.1
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 5.7e-13 79.7 183 30.6
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 7.4e-13 79.3 182 30.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.4e-13 79.3 183 29.0
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 7.4e-13 79.3 188 31.4
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 9.7e-13 79.0 183 29.0
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 9.7e-13 79.0 233 29.2
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 9.7e-13 79.0 183 28.4
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 9.7e-13 79.0 226 27.4
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 9.7e-13 79.0 182 31.9
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.3e-12 78.6 233 27.5
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.3e-12 78.6 182 29.7
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.7e-12 78.2 183 28.4
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.7e-12 78.2 183 28.4
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.7e-12 78.2 226 28.8
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.2e-12 77.8 187 31.0
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.2e-12 77.8 237 29.5
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 2.2e-12 77.8 187 29.9
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.2e-12 77.8 202 28.2
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 2.2e-12 77.8 187 29.9
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.8e-12 77.4 237 29.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.8e-12 77.4 233 29.2
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.8e-12 77.4 233 29.2
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 2.8e-12 77.4 226 27.4
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 3.7e-12 77.0 230 28.3
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 3.7e-12 77.0 226 29.6
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 4.8e-12 76.6 187 29.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 4.8e-12 76.6 226 29.6
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.8e-12 76.6 233 28.8
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 4.8e-12 76.6 242 32.6
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 6.3e-12 76.3 182 29.7
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 8.2e-12 75.9 188 28.7
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 8.2e-12 75.9 187 29.4
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 8.2e-12 75.9 188 28.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 8.2e-12 75.9 226 29.2
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 8.2e-12 75.9 187 27.3
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.1e-11 75.5 187 28.3
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.1e-11 75.5 187 28.3
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.1e-11 75.5 187 28.3
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.1e-11 75.5 186 29.0
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.1e-11 75.5 182 28.6
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.1e-11 75.5 233 27.0
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.1e-11 75.5 182 30.2
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.4e-11 75.1 187 29.4
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.4e-11 75.1 233 26.6
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.8e-11 74.7 187 27.8
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.8e-11 74.7 182 30.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.8e-11 74.7 228 27.2
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.1e-11 73.9 236 26.7
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 3.1e-11 73.9 186 28.5
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 3.1e-11 73.9 233 27.0
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 3.1e-11 73.9 184 32.1
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.1e-11 73.6 226 27.9
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 5.3e-11 73.2 238 27.3
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 5.3e-11 73.2 182 29.1
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 5.3e-11 73.2 233 27.5
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 6.9e-11 72.8 226 27.4
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.2e-10 72.0 238 26.9
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.0e-10 71.2 391 27.4
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 2.0e-10 71.2 227 26.9
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.0e-10 71.2 205 28.8
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.4e-10 70.5 126 34.9
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 4.5e-10 70.1 247 28.3
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 5.9e-10 69.7 233 26.6
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 7.7e-10 69.3 230 27.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-09 67.8 187 28.3
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.2e-09 67.8 132 34.1
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.9e-09 67.4 228 25.9
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 2.9e-09 67.4 237 26.6
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 3.8e-09 67.0 237 27.0
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.0e-09 66.6 232 25.4
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 6.5e-09 66.2 233 25.8
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 6.5e-09 66.2 104 34.6
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 6.5e-09 66.2 126 32.5
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 8.5e-09 65.9 114 36.8
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 8.5e-09 65.9 164 27.4
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.1e-08 65.5 137 31.4
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.4e-08 65.1 100 36.0
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.9e-08 64.7 126 32.5
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 7.2e-08 62.8 135 29.6
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 3.6e-07 60.5 101 35.6
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 6.1e-07 59.7 132 31.1
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.1e-06 56.6 139 29.5
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 5.1e-06 56.6 139 29.5
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 5.1e-06 56.6 176 27.3


User provided reference genes

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