Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g112300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 8.3e-284 979.5 450 100.0
Cre02.g112250 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 2.8e-138 496.1 446 55.4
Cre05.g241202 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 3.6e-69 266.5 394 40.9
Cre17.g728300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 2.0e-67 260.8 405 38.8
MCO05G112 Micromonas commoda HOM05D002496 ORTHO05D002787 9.8e-67 258.5 472 34.3
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 1.5e-46 191.4 356 35.4
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 1.9e-46 191.0 363 34.4
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.9e-46 191.0 363 34.4
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 3.3e-46 190.3 356 34.3
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 4.3e-46 189.9 355 34.9
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 7.3e-46 189.1 355 34.9
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 9.6e-46 188.7 363 34.2
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 1.6e-45 188.0 356 35.1
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 1.6e-45 188.0 356 35.1
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 2.1e-45 187.6 364 33.8
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 2.8e-45 187.2 363 34.7
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 4.7e-45 186.4 297 39.4
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 4.7e-45 186.4 355 34.6
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 6.2e-45 186.0 355 33.8
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 1.1e-44 185.3 355 34.9
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 1.4e-44 184.9 355 34.1
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 1.4e-44 184.9 355 34.1
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 1.4e-44 184.9 355 34.1
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 1.4e-44 184.9 355 34.1
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 1.8e-44 184.5 297 38.4
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.8e-44 184.5 356 33.4
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 2.4e-44 184.1 363 34.2
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 3.1e-44 183.7 355 35.5
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 4.0e-44 183.3 363 34.2
CBR_g23680 Chara braunii HOM05D002496 ORTHO05D002787 4.0e-44 183.3 356 34.8
AUR62040903 Chenopodium quinoa HOM05D002496 ORTHO05D002787 4.0e-44 183.3 355 34.9
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 4.0e-44 183.3 355 33.8
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 4.0e-44 183.3 356 35.4
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 4.0e-44 183.3 355 34.6
Hma1.2p1_0241F.1_g100580 Hydrangea macrophylla HOM05D002496 ORTHO05D002787 5.2e-44 183.0 365 34.0
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 5.2e-44 183.0 355 33.8
PGSC0003DMG400004280 Solanum tuberosum HOM05D002496 ORTHO05D002787 5.2e-44 183.0 355 34.6
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 5.2e-44 183.0 358 35.5
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 5.2e-44 183.0 363 34.2
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 6.8e-44 182.6 355 33.5
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 6.8e-44 182.6 355 34.6
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 6.8e-44 182.6 357 34.7
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 8.9e-44 182.2 355 33.8
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 8.9e-44 182.2 363 34.2
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 8.9e-44 182.2 355 34.1
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 8.9e-44 182.2 355 33.8
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 1.2e-43 181.8 355 33.5
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 1.2e-43 181.8 355 33.5
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 1.2e-43 181.8 359 33.1
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.2e-43 181.8 363 33.9
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 1.5e-43 181.4 355 33.5
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.5e-43 181.4 359 34.8
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 1.5e-43 181.4 296 37.8
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 1.5e-43 181.4 357 34.7
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 2.0e-43 181.0 355 33.5
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 2.0e-43 181.0 357 34.7
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 2.0e-43 181.0 363 33.9
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 2.0e-43 181.0 365 34.5
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 2.6e-43 180.6 355 33.5
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 2.6e-43 180.6 355 34.4
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 2.6e-43 180.6 296 37.5
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 2.6e-43 180.6 355 34.1
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 2.6e-43 180.6 356 34.8
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 3.4e-43 180.3 355 34.4
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 3.4e-43 180.3 356 34.8
Ca_17843_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 3.4e-43 180.3 356 34.8
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 3.4e-43 180.3 296 36.5
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 4.4e-43 179.9 355 33.2
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 4.4e-43 179.9 355 33.2
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 4.4e-43 179.9 355 33.2
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 4.4e-43 179.9 363 33.6
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 4.4e-43 179.9 297 37.0
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 5.8e-43 179.5 355 33.0
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 5.8e-43 179.5 356 33.4
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 5.8e-43 179.5 371 34.2
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 5.8e-43 179.5 296 37.2
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 7.6e-43 179.1 356 34.6
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 7.6e-43 179.1 355 34.4
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 7.6e-43 179.1 296 37.5
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 9.9e-43 178.7 355 33.0
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 9.9e-43 178.7 356 34.6
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 9.9e-43 178.7 356 34.0
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.3e-42 178.3 297 37.0
BcaC08g43618 Brassica carinata HOM05D002496 ORTHO05D002787 1.3e-42 178.3 355 33.0
CDE02G1358 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.3e-42 178.3 296 37.2
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 1.7e-42 177.9 297 36.7
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 2.2e-42 177.6 355 33.2
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 2.2e-42 177.6 355 34.1
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 2.9e-42 177.2 296 37.2
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 2.9e-42 177.2 356 33.1
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 2.9e-42 177.2 297 36.7
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 2.9e-42 177.2 296 36.8
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 2.9e-42 177.2 296 36.8
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 2.9e-42 177.2 296 37.8
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 2.9e-42 177.2 356 33.4
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 2.9e-42 177.2 296 36.1
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 3.8e-42 176.8 355 34.4
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 3.8e-42 176.8 300 36.7
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 3.8e-42 176.8 297 38.0
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 4.9e-42 176.4 296 37.5
Psat7g063600 Pisum sativum HOM05D002496 ORTHO05D002787 4.9e-42 176.4 356 34.8
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 4.9e-42 176.4 355 34.1
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 1.4e-41 174.9 296 36.8
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 1.9e-41 174.5 355 33.2
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 1.9e-41 174.5 355 33.2
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 2.4e-41 174.1 355 32.7
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 4.2e-41 173.3 296 36.5
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 5.4e-41 172.9 296 36.5
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 7.1e-41 172.6 356 34.0
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 7.1e-41 172.6 356 34.0
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 7.1e-41 172.6 355 32.4
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 1.2e-40 171.8 296 36.1
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 1.6e-40 171.4 331 34.4
FvH4_3g45640 Fragaria vesca HOM05D002496 ORTHO05D002787 6.0e-40 169.5 333 33.3
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 6.0e-40 169.5 296 37.2
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 1.7e-39 167.9 355 32.4
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 1.7e-39 167.9 355 32.4
CBR_g37133 Chara braunii HOM05D002496 ORTHO05D002787 2.3e-39 167.5 297 33.7
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 6.6e-39 166.0 411 30.4
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 2.5e-38 164.1 325 33.8
CAN.G2119.1 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-38 164.1 284 36.6
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 5.3e-36 156.4 355 32.7
MCO16G075 Micromonas commoda HOM05D002496 ORTHO05D002787 5.3e-36 156.4 203 37.4
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 4.4e-35 153.3 325 32.9
FAN11G3798 Fragaria x ananassa HOM05D002496 ORTHO05D002787 5.6e-30 136.3 236 36.0
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-29 135.2 235 35.7
MCO09G147 Micromonas commoda HOM05D002496 ORTHO05D002787 1.6e-29 134.8 352 30.7
MCO11G888 Micromonas commoda HOM05D002496 ORTHO05D002787 1.1e-28 132.1 342 30.7
FAN11G2291 Fragaria x ananassa HOM05D002496 ORTHO05D002787 4.0e-28 130.2 254 34.6
CAN.G1751.13 Capsicum annuum HOM05D002496 ORTHO05D002787 2.9e-26 124.0 283 29.7
CBR_g39746 Chara braunii HOM05D002496 ORTHO05D002787 1.2e-24 118.6 362 27.9
CAN.G1669.10 Capsicum annuum HOM05D002496 ORTHO05D002787 7.9e-24 115.9 236 33.9
MCO07G349 Micromonas commoda HOM05D002496 ORTHO05D002787 1.1e-22 112.1 371 27.8
FvH4_3g45670 Fragaria vesca HOM05D002496 ORTHO05D002787 2.2e-18 97.8 209 34.9
CBR_g38074 Chara braunii HOM05D007859 ORTHO05D002787 4.9e-18 96.7 314 27.7
CBR_g23253 Chara braunii HOM05D002496 ORTHO05D002787 1.9e-14 84.7 305 27.2
CBR_g38075 Chara braunii HOM05D000019 ORTHO05D002787 4.3e-14 83.6 127 37.0
PRCOL_00006516 Prasinoderma coloniale HOM05D002496 ORTHO05D002787 2.9e-10 70.9 226 27.9


User provided reference genes

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