Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 0.0e+00 1366.3 736 100.0
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.1e-134 483.4 604 45.9
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 8.7e-97 359.0 643 37.0
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 1.5e-96 358.2 643 37.0
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 3.3e-96 357.1 643 36.9
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.3e-96 356.7 645 36.9
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.3e-96 356.7 645 36.9
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 4.3e-96 356.7 643 37.2
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 5.7e-96 356.3 644 37.4
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 7.4e-96 355.9 652 36.2
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 7.4e-96 355.9 643 37.0
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 9.6e-96 355.5 643 37.0
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.3e-95 355.1 645 36.7
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.6e-95 354.8 643 36.4
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.6e-95 354.8 643 36.7
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.6e-95 354.8 644 36.2
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.6e-95 354.8 644 36.3
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.6e-95 354.8 643 36.9
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 2.1e-95 354.4 648 36.7
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.1e-95 354.4 647 36.9
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 2.8e-95 354.0 643 36.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.8e-95 354.0 644 36.6
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 3.7e-95 353.6 643 36.5
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 4.8e-95 353.2 654 36.5
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 4.8e-95 353.2 656 36.6
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 4.8e-95 353.2 645 35.7
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 4.8e-95 353.2 665 36.4
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 1.1e-94 352.1 651 35.9
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.1e-94 352.1 643 35.9
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.1e-94 352.1 645 36.6
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.4e-94 351.7 644 36.5
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 3.1e-94 350.5 643 36.5
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 4.1e-94 350.1 650 36.6
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 5.3e-94 349.7 648 36.3
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 6.9e-94 349.4 648 36.3
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 9.0e-94 349.0 648 36.3
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 1.2e-93 348.6 644 36.8
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.2e-93 348.6 648 36.3
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.5e-93 348.2 645 36.7
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.5e-93 348.2 649 36.2
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.5e-93 348.2 643 36.1
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.5e-93 348.2 649 36.2
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.0e-93 347.8 643 36.1
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 2.0e-93 347.8 645 36.4
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.0e-93 347.8 644 36.2
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 2.0e-93 347.8 643 35.6
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.0e-93 347.8 646 36.7
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.6e-93 347.4 643 35.9
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.6e-93 347.4 654 36.2
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.6e-93 347.4 643 36.9
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 3.4e-93 347.1 646 36.1
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 4.5e-93 346.7 647 36.5
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 5.9e-93 346.3 643 35.8
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 5.9e-93 346.3 648 36.1
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 5.9e-93 346.3 645 36.0
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 7.6e-93 345.9 645 36.4
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 7.6e-93 345.9 645 36.3
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 7.6e-93 345.9 643 36.1
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.0e-92 345.5 654 36.2
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.3e-92 345.1 644 36.0
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.3e-92 345.1 658 36.2
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.2e-92 344.4 644 36.0
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.2e-92 344.4 643 36.2
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 2.2e-92 344.4 645 35.8
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.2e-92 344.4 643 37.0
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 2.9e-92 344.0 643 35.9
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 3.8e-92 343.6 643 35.9
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 3.8e-92 343.6 643 36.1
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 5.0e-92 343.2 646 36.2
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 6.5e-92 342.8 644 36.2
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 6.5e-92 342.8 643 36.2
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 8.5e-92 342.4 643 35.9
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 1.1e-91 342.0 645 35.8
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.1e-91 342.0 643 35.9
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.1e-91 342.0 651 35.8
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.1e-91 342.0 643 36.5
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.4e-91 341.7 656 34.9
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.4e-91 341.7 647 36.0
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.9e-91 341.3 645 35.8
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.9e-91 341.3 643 35.8
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.9e-91 341.3 657 37.4
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.9e-91 341.3 652 35.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.9e-91 341.3 643 35.9
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.9e-91 341.3 643 35.8
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 2.5e-91 340.9 646 35.9
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 2.5e-91 340.9 641 36.2
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 2.5e-91 340.9 645 36.0
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 2.5e-91 340.9 643 36.4
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 3.2e-91 340.5 655 35.7
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 3.2e-91 340.5 643 35.3
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 3.2e-91 340.5 646 35.3
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 4.2e-91 340.1 643 35.9
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 4.2e-91 340.1 643 35.6
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 5.5e-91 339.7 650 37.1
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 5.5e-91 339.7 653 35.4
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 7.2e-91 339.3 643 35.9
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 9.3e-91 339.0 643 35.8
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.2e-90 338.6 620 35.3
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.2e-90 338.6 649 35.6
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.2e-90 338.6 644 35.6
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 2.1e-90 337.8 643 35.0
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 2.1e-90 337.8 644 35.9
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 2.1e-90 337.8 644 35.6
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 2.7e-90 337.4 647 35.4
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 3.6e-90 337.0 646 36.1
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 3.6e-90 337.0 643 35.5
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 4.6e-90 336.7 645 35.7
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 4.6e-90 336.7 648 36.0
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 6.1e-90 336.3 646 36.1
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.0e-89 335.5 661 34.5
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.0e-89 335.5 614 36.6
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.3e-89 334.3 643 35.8
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 3.9e-89 333.6 648 35.8
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 1.5e-88 331.6 652 35.0
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 2.5e-88 330.9 630 35.9
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.1e-86 325.5 687 35.4
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 4.1e-86 323.6 630 35.1
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 6.9e-86 322.8 644 35.7
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 2.6e-85 320.9 409 45.2
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 5.9e-85 319.7 619 34.9
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 3.2e-83 313.9 645 33.6
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 3.2e-83 313.9 645 35.2
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 4.6e-82 310.1 581 37.5
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.5e-80 305.1 648 34.3
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.7e-76 291.6 642 32.4
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 7.2e-75 286.2 551 35.4
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.1e-74 284.6 549 35.3
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 7.4e-72 276.2 551 34.7
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.1e-70 272.3 561 34.6
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 4.8e-63 246.9 323 45.5
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.8e-57 228.4 440 34.1
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.4e-56 224.2 420 36.0
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 2.7e-53 214.5 247 48.6
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 8.6e-52 209.5 637 29.2
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 3.8e-44 184.1 182 53.3
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 8.0e-42 176.4 456 33.1
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.0e-41 174.5 620 30.2
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 2.4e-38 164.9 364 33.0
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 3.5e-37 161.0 461 29.1
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 5.9e-37 160.2 241 40.2
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 1.9e-35 155.2 311 34.1
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.3e-33 148.3 355 30.7
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 3.4e-32 144.4 355 31.5
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 3.7e-31 141.0 449 27.6
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 8.3e-31 139.8 118 61.9
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.3e-28 132.5 196 38.8
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.8e-26 124.8 97 61.9
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 7.1e-22 110.2 124 44.4
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.6e-21 109.0 121 43.8
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 6.6e-20 103.6 73 67.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 6.2e-18 97.1 64 70.3
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 6.8e-17 93.6 80 56.2
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-16 92.8 163 36.8
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.9e-14 85.5 71 56.3
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 6.2e-10 70.5 73 46.6
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 8.1e-10 70.1 91 41.8
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-09 68.9 88 40.9
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 6.9e-09 67.0 73 41.1
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 9.0e-09 66.6 91 40.7
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.5e-08 65.9 53 58.5
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 9.9e-08 63.2 88 42.0
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.9e-07 61.6 89 40.4
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.1e-06 57.0 78 42.3
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 9.3e-06 56.6 45 51.1


User provided reference genes

Program Settings